ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042390 Gatad2b 10090 + 3:90293184-90363407 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049382 Gatad2b-201 90341654-90358120 protein_coding
  ENSMUST00000196212 Gatad2b-003 90293361-90363407 retained_intron
  ENSMUST00000197988 Gatad2b-001 90293184-90363407 protein_coding
  ENSMUST00000199607 Gatad2b-006 90294147-90358373 protein_coding
  ENSMUST00000199754 Gatad2b-004 90293184-90363407 protein_coding
  ENSMUST00000199820 Gatad2b-008 90335395-90337951 retained_intron
  ENSMUST00000200213 Gatad2b-007 90311518-90317015 retained_intron
  ENSMUST00000200373 Gatad2b-005 90293184-90352552 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000049382ENSMUST00000199607ENSMUST00000199754ENSMUST00000199820ENSMUST00000200213
Transcript ID C166 Tie2+ EC mES
ENSMUST00000049382 6.562±0.45 17.092±5.96 6.413±0.00
ENSMUST00000199607 N/A N/A 8.483±2.13
ENSMUST00000199754 7.993±2.28 8.169±0.00 N/A
ENSMUST00000199820 0.028±0.02 0.620±0.44 0.099±0.03
ENSMUST00000200213 0.050±0.03 0.704±0.55 0.409±0.04

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0031492 IEA nucleosomal DNA binding
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005834 gatad2b protein_coding Danio_rerio
ENSG00000143614 GATAD2B GATA zinc finger domain containing 2B protein_coding Homo_sapiens

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