ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043909 Trp53bp1 10090 - 2:121193281-121271407 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000110647 Trp53bp1-002 121194838-121271341 protein_coding
  ENSMUST00000110648 Trp53bp1-001 121194838-121271407 protein_coding
  ENSMUST00000124031 Trp53bp1-011 121232100-121235821 processed_transcript
  ENSMUST00000124060 Trp53bp1-008 121269630-121271370 retained_intron
  ENSMUST00000124411 Trp53bp1-014 121208845-121221232 retained_intron
  ENSMUST00000124554 Trp53bp1-019 121208420-121221241 nonsense_mediated_decay
  ENSMUST00000129752 Trp53bp1-010 121236824-121252027 nonsense_mediated_decay
  ENSMUST00000131245 Trp53bp1-003 121216143-121271321 protein_coding
  ENSMUST00000131426 Trp53bp1-009 121258886-121270286 retained_intron
  ENSMUST00000132812 Trp53bp1-015 121205081-121208574 processed_transcript
  ENSMUST00000135890 Trp53bp1-006 121193281-121211975 processed_transcript
  ENSMUST00000136617 Trp53bp1-004 121256514-121271369 processed_transcript
  ENSMUST00000140285 Trp53bp1-005 121267312-121271361 retained_intron
  ENSMUST00000140582 Trp53bp1-013 121211308-121218436 processed_transcript
  ENSMUST00000142400 Trp53bp1-017 121228369-121235689 protein_coding
  ENSMUST00000147540 Trp53bp1-007 121198251-121236006 nonsense_mediated_decay
  ENSMUST00000147554 Trp53bp1-016 121199639-121204981 processed_transcript
  ENSMUST00000154426 Trp53bp1-018 121202693-121207762 nonsense_mediated_decay
  ENSMUST00000156493 Trp53bp1-012 121215889-121221379 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000110647ENSMUST00000110648ENSMUST00000147540
Transcript ID C166 Tie2+ EC mES
ENSMUST00000110647 N/A 3.811±2.22 2.209±0.00
ENSMUST00000110648 20.601±4.13 3.478±0.76 4.505±0.02
ENSMUST00000147540 N/A 3.889±0.33 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0005YH CIL_0005YH_0002 CGP
CIL_0005YA CIL_0005YA_0002 CGP
CIL_0005YB CIL_0005YB_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000776 IDA kinetochore
GO:0000781 IEA chromosome, telomeric region
GO:0001102 IEA RNA polymerase II activating transcription factor binding
GO:0001104 IEA RNA polymerase II transcription cofactor activity
GO:0002039 IEA p53 binding
GO:0003684 IDA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005657 IDA replication fork
GO:0005737 IEA cytoplasm
GO:0006281 IDA DNA repair
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006974 ISO cellular response to DNA damage stimulus
GO:0008134 TAS transcription factor binding
GO:0035064 IEA methylated histone binding
GO:0042162 IDA telomeric DNA binding
GO:0043565 IDA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079000 tp53bp1 protein_coding Danio_rerio
ENSG00000067369 TP53BP1 tumor protein p53 binding protein 1 protein_coding Homo_sapiens

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