ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000045179 Sox3 10090 - X:60891366-60893430 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000135107 Sox3-001 60891366-60893430 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; Tie2+ ECmESENSMUST00000135107
Transcript ID Tie2+ EC mES
ENSMUST00000135107 0.053±0.02 0.783±0.03

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0008R8 CIL_0008R8_0002 VISTA
CIL_0001AO CIL_0001AO_0002 CGP
CIL_0008YR CIL_0008YR_0002 VISTA
CIL_000974 CIL_000974_0002 VISTA
CIL_0008TQ CIL_0008TQ_0002 VISTA
CIL_0007M2 CIL_0007M2_0002 UCNEbase

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0001106 IDA RNA polymerase II transcription corepressor activity
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007423 IMP sensory organ development
GO:0007530 IMP sex determination
GO:0009887 IMP organ morphogenesis
GO:0021854 IMP hypothalamus development
GO:0021983 IMP pituitary gland development
GO:0030900 IMP forebrain development
GO:0045665 ISS negative regulation of neuron differentiation
GO:0048515 IMP spermatid differentiation
GO:0048666 IEA neuron development
GO:0060009 IEP Sertoli cell development
GO:0060324 IMP face development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053569 sox3 protein_coding Danio_rerio
ENSG00000134595 SOX3 SRY (sex determining region Y)-box 3 protein_coding Homo_sapiens

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