ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061887 Ssbp3 10090 + 4:106910701-107049694 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030367 Ssbp3-001 106911470-107049694 protein_coding
  ENSMUST00000072753 Ssbp3-002 106911533-107048567 protein_coding
  ENSMUST00000097934 Ssbp3-006 106911667-107048498 protein_coding
  ENSMUST00000124936 Ssbp3-007 106955859-107048692 processed_transcript
  ENSMUST00000131111 Ssbp3-013 107030832-107031485 processed_transcript
  ENSMUST00000131440 Ssbp3-010 106966426-107031067 protein_coding
  ENSMUST00000132506 Ssbp3-011 106911861-107010534 processed_transcript
  ENSMUST00000133827 Ssbp3-014 107038202-107048519 processed_transcript
  ENSMUST00000136487 Ssbp3-016 107046954-107048450 processed_transcript
  ENSMUST00000137786 Ssbp3-012 107028193-107037363 processed_transcript
  ENSMUST00000138475 Ssbp3-008 106923225-107038248 processed_transcript
  ENSMUST00000141963 Ssbp3-004 106941698-107048543 processed_transcript
  ENSMUST00000146659 Ssbp3-003 106912298-107048515 processed_transcript
  ENSMUST00000148842 Ssbp3-009 106923185-107031021 processed_transcript
  ENSMUST00000149926 Ssbp3-017 106911511-107038742 protein_coding
  ENSMUST00000150915 Ssbp3-005 106910701-107031069 processed_transcript
  ENSMUST00000156288 Ssbp3-015 107038233-107040657 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000030367ENSMUST00000072753ENSMUST00000133827
Transcript ID C166 Tie2+ EC mES
ENSMUST00000030367 4.736±0.00 2.515±0.00 82.361±17.50
ENSMUST00000072753 10.429±2.51 4.788±0.35 25.773±2.63
ENSMUST00000133827 18.535±5.41 N/A N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00085J CIL_00085J_0002 VISTA
CIL_0001FM CIL_0001FM_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002244 IMP hematopoietic progenitor cell differentiation
GO:0003697 ISA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006461 IMP protein complex assembly
GO:0008284 IMP positive regulation of cell proliferation
GO:0021501 IMP prechordal plate formation
GO:0021547 IMP midbrain-hindbrain boundary initiation
GO:0043234 IDA protein complex
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060322 IGI head development
GO:0060323 IMP head morphogenesis
GO:2000744 IMP positive regulation of anterior head development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030155 ssbp3b protein_coding Danio_rerio
ENSDARG00000058237 ssbp3a protein_coding Danio_rerio
ENSG00000157216 SSBP3 single stranded DNA binding protein 3 protein_coding Homo_sapiens

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