ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000064329 Scn1a 10090 - 2:66270778-66440840 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000077489 Scn1a-004 66270784-66351195 protein_coding
  ENSMUST00000094951 Scn1a-005 66272885-66351177 protein_coding
  ENSMUST00000112366 Scn1a-001 66270781-66410064 protein_coding
  ENSMUST00000112371 Scn1a-201 66270782-66440837 protein_coding
  ENSMUST00000129508 Scn1a-002 66348364-66440814 retained_intron
  ENSMUST00000138910 Scn1a-006 66326064-66440840 protein_coding
  ENSMUST00000156865 Scn1a-003 66272892-66318139 protein_coding
  ENSMUST00000200839 Scn1a-007 66270778-66317946 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000077489ENSMUST00000094951ENSMUST00000129508
Transcript ID C166 Tie2+ EC mES
ENSMUST00000077489 N/A 0.049±0.00 0.021±0.00
ENSMUST00000094951 0.005±0.00 N/A 0.005±0.00
ENSMUST00000129508 N/A N/A 0.022±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00087V CIL_00087V_0002 VISTA
CIL_0006CL CIL_0006CL_0002 CGP
CIL_0006CK CIL_0006CK_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001508 IMP action potential
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005248 IMP voltage-gated sodium channel activity
GO:0006814 IMP sodium ion transport
GO:0007628 IMP adult walking behavior
GO:0014704 IDA intercalated disc
GO:0016020 IDA membrane
GO:0019227 IMP neuronal action potential propagation
GO:0019228 IMP neuronal action potential
GO:0030018 IDA Z disc
GO:0030315 IDA T-tubule
GO:0030424 IDA axon
GO:0033268 IDA node of Ranvier
GO:0034706 IPI sodium channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0042391 IMP regulation of membrane potential
GO:0043025 IDA neuronal cell body
GO:0043194 IDA axon initial segment
GO:0050884 IMP neuromuscular process controlling posture
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062744 scn1lab protein_coding Danio_rerio
ENSG00000144285 SCN1A sodium channel, voltage-gated, type I, alpha subunit protein_coding Homo_sapiens

Loading