ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129049 Ercc4-004 ENSMUSG00000022545 10090 + 16:13111794-13150617 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECENSMUST00000129049
Transcript ID C166 Tie2+ EC
ENSMUST00000129049 0.542±0.09 1.006±0.20

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000014 IBA single-stranded DNA endodeoxyribonuclease activity
GO:0000109 ISO nucleotide-excision repair complex
GO:0000110 IBA nucleotide-excision repair factor 1 complex
GO:0000712 IBA resolution of meiotic recombination intermediates
GO:0000724 IBA double-strand break repair via homologous recombination
GO:0000737 IBA DNA catabolic process, endonucleolytic
GO:0001094 IDA TFIID-class transcription factor binding
GO:0003684 IBA damaged DNA binding
GO:0003697 IBA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005669 IDA transcription factor TFIID complex
GO:0006281 IMP DNA repair
GO:0006289 ISO nucleotide-excision repair
GO:0006296 IBA nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0009650 IMP UV protection
GO:1901255 IBA nucleotide-excision repair involved in interstrand cross-link repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000311895 ERCC4-001 protein_coding Homo_sapiens 0 1227
ENST00000574194 ERCC4-007 nonsense_mediated_decay Homo_sapiens 0 377
ENST00000574781 ERCC4-006 processed_transcript Homo_sapiens 0 403
ENST00000575156 ERCC4-003 protein_coding Homo_sapiens 0 808
ENST00000595191 MYO1F-005 retained_intron Homo_sapiens 0.000000000003 77

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