ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: AT rich interactive domain 1A (SWI-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374152 ARID1A-003 ENSG00000117713 9606 + 1:26729380-26780756 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; HAoECENST00000374152
Transcript ID HAoEC
ENST00000374152 1.983±0.59

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003677 NAS:IEA DNA binding
GO:0003713 NAS transcription coactivator activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA:IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0016514 IDA SWI/SNF complex
GO:0016922 IPI ligand-dependent nuclear receptor binding
GO:0030520 IDA intracellular estrogen receptor signaling pathway
GO:0030521 IDA androgen receptor signaling pathway
GO:0042766 TAS nucleosome mobilization
GO:0042921 IDA glucocorticoid receptor signaling pathway
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0048096 TAS chromatin-mediated maintenance of transcription
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex
GO:0090544 IEA BAF-type complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105897 Arid1a-201 protein_coding Mus_musculus 0 8137
ENSMUST00000008024 Arid1a-002 protein_coding Mus_musculus 0 8059
ENSMUST00000145664 Arid1a-001 protein_coding Mus_musculus 0 8059
ENSMUST00000138473 Arid1a-003 retained_intron Mus_musculus 0 1522
ENSMUST00000139709 Arid1a-004 protein_coding Mus_musculus 0 645
ENSMUST00000168582 Arid1a-006 retained_intron Mus_musculus 0 538

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