ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: protocadherin alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394633 PCDHA1-001 ENSG00000204970 9606 + 5:140786291-141010080 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007399 TAS nervous system development
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070797 Pcdha1-002 protein_coding Mus_musculus 0 1570
ENSMUST00000193839 Pcdha1-001 protein_coding Mus_musculus 0 1570
ENSMUST00000047614 Pcdha12-001 protein_coding Mus_musculus 0 948
ENSMUST00000193856 Pcdha11-002 protein_coding Mus_musculus 0 922
ENSMUST00000192295 Pcdha4-003 protein_coding Mus_musculus 0 915
ENSMUST00000115657 Pcdha11-001 protein_coding Mus_musculus 0 891
ENSMUST00000115659 Pcdha9-001 protein_coding Mus_musculus 0 889
ENSMUST00000047479 Pcdhac2-001 protein_coding Mus_musculus 0 889
ENSMUST00000192512 Pcdha4-001 protein_coding Mus_musculus 0 889
ENSMUST00000115662 Pcdha2-001 protein_coding Mus_musculus 0 889
ENSMUST00000194038 Pcdha8-001 protein_coding Mus_musculus 0 889
ENSMUST00000007584 Pcdhac1-001 protein_coding Mus_musculus 0 887
ENSMUST00000115658 Pcdha11-001 protein_coding Mus_musculus 0 885
ENSMUST00000192631 Pcdha7-001 protein_coding Mus_musculus 0 885
ENSMUST00000193777 Pcdha6-001 protein_coding Mus_musculus 0 885
ENSMUST00000192503 Pcdha3-001 protein_coding Mus_musculus 0 885
ENSMUST00000192168 Pcdha5-001 protein_coding Mus_musculus 0 885
ENSMUST00000195590 Pcdha2-002 protein_coding Mus_musculus 0 878
ENSMUST00000192447 Pcdha11-005 protein_coding Mus_musculus 0 455
ENSMUST00000194691 Pcdha11-004 retained_intron Mus_musculus 0 455
ENSMUST00000194050 Pcdha11-003 retained_intron Mus_musculus 0 455
ENSMUST00000194501 Gm36858-001 unprocessed_pseudogene Mus_musculus 0 425
ENSMUST00000193389 Pcdha6-002 protein_coding Mus_musculus 0 422
ENSMUST00000194751 Pcdha6-003 nonsense_mediated_decay Mus_musculus 0 399
ENSMUST00000194235 Pcdha4-002 retained_intron Mus_musculus 0 398
ENSMUST00000115661 Pcdha4-001 protein_coding Mus_musculus 0 398

Loading