ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: protocadherin alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000504120 PCDHA1-002 ENSG00000204970 9606 + 5:140786291-141012347 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007399 TAS nervous system development
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070797 Pcdha1-002 protein_coding Mus_musculus 0 5421
ENSMUST00000047614 Pcdha12-001 protein_coding Mus_musculus 0 4706
ENSMUST00000115662 Pcdha2-001 protein_coding Mus_musculus 0 4636
ENSMUST00000115658 Pcdha11-001 protein_coding Mus_musculus 0 4505
ENSMUST00000192503 Pcdha3-001 protein_coding Mus_musculus 0 4277
ENSMUST00000192512 Pcdha4-001 protein_coding Mus_musculus 0 4231
ENSMUST00000115657 Pcdha11-001 protein_coding Mus_musculus 0 4218
ENSMUST00000115659 Pcdha9-001 protein_coding Mus_musculus 0 4198
ENSMUST00000194038 Pcdha8-001 protein_coding Mus_musculus 0 4191
ENSMUST00000193777 Pcdha6-001 protein_coding Mus_musculus 0 4172
ENSMUST00000192168 Pcdha5-001 protein_coding Mus_musculus 0 3360
ENSMUST00000192631 Pcdha7-001 protein_coding Mus_musculus 0 3356
ENSMUST00000047479 Pcdhac2-001 protein_coding Mus_musculus 0 3354
ENSMUST00000007584 Pcdhac1-001 protein_coding Mus_musculus 0 3354
ENSMUST00000193839 Pcdha1-001 protein_coding Mus_musculus 0 2457
ENSMUST00000192295 Pcdha4-003 protein_coding Mus_musculus 0 2357
ENSMUST00000192447 Pcdha11-005 protein_coding Mus_musculus 0 1949
ENSMUST00000195590 Pcdha2-002 protein_coding Mus_musculus 0 1949
ENSMUST00000193389 Pcdha6-002 protein_coding Mus_musculus 0 1949
ENSMUST00000194751 Pcdha6-003 nonsense_mediated_decay Mus_musculus 0 1707
ENSMUST00000194691 Pcdha11-004 retained_intron Mus_musculus 0 1103
ENSMUST00000194235 Pcdha4-002 retained_intron Mus_musculus 0 939
ENSMUST00000115661 Pcdha4-001 protein_coding Mus_musculus 0 939
ENSMUST00000194050 Pcdha11-003 retained_intron Mus_musculus 0 926
ENSMUST00000194501 Gm36858-001 unprocessed_pseudogene Mus_musculus 0 880
ENSMUST00000193856 Pcdha11-002 protein_coding Mus_musculus 0 671
ENSMUST00000193984 Gm37388-001 protein_coding Mus_musculus 0 298

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