Missing Database Connection

Error: A Database connection using "Mysql" was missing or unable to connect.
The database server returned this error: SQLSTATE[HY000] [2002] Connection refused

Notice: If you want to customize this error message, create app/View/Errors/missing_connection.ctp

Stack Trace

• CORE/Cake/Model/Datasource/DboSource.php line 260 → Mysql->connect()

              ));
          }
          if ($autoConnect) {
              $this->connect();
          }

• CORE/Cake/Model/ConnectionManager.php line 105 → DboSource->__construct(array)

                  'message' => 'Datasource is not found in Model/Datasource package.'
              ));
          }
          self::$_dataSources[$name] = new $class(self::$config->{$name});
          self::$_dataSources[$name]->configKeyName = $name;

  array(
  	'password' => '*****',
  	'login' => '*****',
  	'host' => '*****',
  	'database' => '*****',
  	'prefix' => '*****',
  	'datasource' => 'Database/Mysql',
  	'persistent' => false
  )

• CORE/Cake/Model/Model.php line 3524 → ConnectionManager::getDataSource(string)

              $this->useDbConfig = $dataSource;
          }
  
          $db = ConnectionManager::getDataSource($this->useDbConfig);
          if (!empty($oldConfig) && isset($db->config['prefix'])) {

  'default'

• CORE/Cake/Model/Model.php line 1136 → Model->setDataSource(string)

   * @return void
   */
      public function setSource($tableName) {
          $this->setDataSource($this->useDbConfig);
          $db = ConnectionManager::getDataSource($this->useDbConfig);

  'default'

• CORE/Cake/Model/Model.php line 3551 → Model->setSource(string)

      public function getDataSource() {
          if (!$this->_sourceConfigured && $this->useTable !== false) {
              $this->_sourceConfigured = true;
              $this->setSource($this->useTable);
          }

  'transcripts'

• CORE/Cake/Model/Model.php line 3066 → Model->getDataSource()

                  $query = $this->{'_find' . ucfirst($query['type'])}('before', $query);
              }
  
              $db = $this->getDataSource();
              $query['order'] = false;

• CORE/Cake/Model/Model.php line 2979 → Model->_findCount(string, array)

          );
  
          if ($this->findMethods[$type] === true) {
              $query = $this->{'_find' . ucfirst($type)}('before', $query);
          }

  'before'
  array(
  	'conditions' => null,
  	'fields' => null,
  	'joins' => array(),
  	'limit' => null,
  	'offset' => null,
  	'order' => null,
  	'page' => (int) 1,
  	'group' => null,
  	'callbacks' => true
  )

• CORE/Cake/Model/Model.php line 2914 → Model->buildQuery(string, array)

          $this->findQueryType = $type;
          $this->id = $this->getID();
  
          $query = $this->buildQuery($type, $query);
          if ($query === null) {

  'count'
  array()

• APP/Controller/TranscriptController.php line 502 → Model->find(string)

          if ($search_data == "")
          {
              //$accession_table = $this->getall();
              $row_total = $this->Transcript->find('count');
          }

  'count'

• [internal function] → TranscriptController->index()

• CORE/Cake/Controller/Controller.php line 490 → ReflectionMethod->invokeArgs(TranscriptController, array)

                      'action' => $request->params['action']
                  ));
              }
              return $method->invokeArgs($this, $request->params['pass']);
  

  object(TranscriptController) {
  	helpers => array(
  		[maximum depth reached]
  	)
  	components => array(
  		[maximum depth reached]
  	)
  	page_size_choices => array(
  		[maximum depth reached]
  	)
  	default_choice => '10'
  	UCSC_links => array(
  		[maximum depth reached]
  	)
  	accession_map => array(
  		[maximum depth reached]
  	)
  	sci_name_map => array(
  		[maximum depth reached]
  	)
  	expression_types => array(
  		[maximum depth reached]
  	)
  	expression_type_none => 'none'
  	expression_type_default => 'Enriched'
  	geneviewer => array(
  		[maximum depth reached]
  	)
  	name => 'Transcript'
  	uses => array(
  		[maximum depth reached]
  	)
  	request => object(CakeRequest) {}
  	response => object(CakeResponse) {}
  	viewPath => 'Transcript'
  	layoutPath => null
  	viewVars => array(
  		[maximum depth reached]
  	)
  	view => 'index'
  	layout => 'default'
  	autoRender => true
  	autoLayout => true
  	Components => object(ComponentCollection) {}
  	viewClass => 'View'
  	View => null
  	ext => '.ctp'
  	plugin => null
  	cacheAction => false
  	passedArgs => array([maximum depth reached])
  	scaffold => false
  	methods => array(
  		[maximum depth reached]
  	)
  	modelClass => 'Transcript'
  	modelKey => 'transcript'
  	validationErrors => null
  	Session => object(SessionComponent) {}
  	RequestHandler => object(RequestHandlerComponent) {}
  	Transcript => object(Transcript) {}
  	[protected] _responseClass => 'CakeResponse'
  	[protected] _mergeParent => 'AppController'
  	[protected] _eventManager => object(CakeEventManager) {}
  	[private] operators => array(
  		[maximum depth reached]
  	)
  	[private] num_operands => array(
  		[maximum depth reached]
  	)
  	[private] parenthesis => array(
  		[maximum depth reached]
  	)
  }
  array()

• CORE/Cake/Routing/Dispatcher.php line 191 → Controller->invokeAction(CakeRequest)

  
          $response = $controller->response;
          $render = true;
          $result = $controller->invokeAction($request);
          if ($result instanceof CakeResponse) {

  object(CakeRequest) {
  	params => array(
  		[maximum depth reached]
  	)
  	data => array([maximum depth reached])
  	query => array(
  		[maximum depth reached]
  	)
  	url => 'transcript'
  	base => ''
  	webroot => '/'
  	here => '/transcript'
  	[protected] _detectors => array(
  		[maximum depth reached]
  	)
  	[protected] _input => ''
  }

• CORE/Cake/Routing/Dispatcher.php line 165 → Dispatcher->_invoke(TranscriptController, CakeRequest)

              ));
          }
  
          $response = $this->_invoke($controller, $request);
          if (isset($request->params['return'])) {

  object(TranscriptController) {
  	helpers => array(
  		[maximum depth reached]
  	)
  	components => array(
  		[maximum depth reached]
  	)
  	page_size_choices => array(
  		[maximum depth reached]
  	)
  	default_choice => '10'
  	UCSC_links => array(
  		[maximum depth reached]
  	)
  	accession_map => array(
  		[maximum depth reached]
  	)
  	sci_name_map => array(
  		[maximum depth reached]
  	)
  	expression_types => array(
  		[maximum depth reached]
  	)
  	expression_type_none => 'none'
  	expression_type_default => 'Enriched'
  	geneviewer => array(
  		[maximum depth reached]
  	)
  	name => 'Transcript'
  	uses => array(
  		[maximum depth reached]
  	)
  	request => object(CakeRequest) {}
  	response => object(CakeResponse) {}
  	viewPath => 'Transcript'
  	layoutPath => null
  	viewVars => array(
  		[maximum depth reached]
  	)
  	view => 'index'
  	layout => 'default'
  	autoRender => true
  	autoLayout => true
  	Components => object(ComponentCollection) {}
  	viewClass => 'View'
  	View => null
  	ext => '.ctp'
  	plugin => null
  	cacheAction => false
  	passedArgs => array([maximum depth reached])
  	scaffold => false
  	methods => array(
  		[maximum depth reached]
  	)
  	modelClass => 'Transcript'
  	modelKey => 'transcript'
  	validationErrors => null
  	Session => object(SessionComponent) {}
  	RequestHandler => object(RequestHandlerComponent) {}
  	Transcript => object(Transcript) {}
  	[protected] _responseClass => 'CakeResponse'
  	[protected] _mergeParent => 'AppController'
  	[protected] _eventManager => object(CakeEventManager) {}
  	[private] operators => array(
  		[maximum depth reached]
  	)
  	[private] num_operands => array(
  		[maximum depth reached]
  	)
  	[private] parenthesis => array(
  		[maximum depth reached]
  	)
  }
  object(CakeRequest) {
  	params => array(
  		[maximum depth reached]
  	)
  	data => array([maximum depth reached])
  	query => array(
  		[maximum depth reached]
  	)
  	url => 'transcript'
  	base => ''
  	webroot => '/'
  	here => '/transcript'
  	[protected] _detectors => array(
  		[maximum depth reached]
  	)
  	[protected] _input => ''
  }

• APP/webroot/index.php line 108 → Dispatcher->dispatch(CakeRequest, CakeResponse)

  $Dispatcher->dispatch(
      new CakeRequest(),
      new CakeResponse()
  );
  

  object(CakeRequest) {
  	params => array(
  		[maximum depth reached]
  	)
  	data => array([maximum depth reached])
  	query => array(
  		[maximum depth reached]
  	)
  	url => 'transcript'
  	base => ''
  	webroot => '/'
  	here => '/transcript'
  	[protected] _detectors => array(
  		[maximum depth reached]
  	)
  	[protected] _input => ''
  }
  object(CakeResponse) {
  	[protected] _statusCodes => array(
  		[maximum depth reached]
  	)
  	[protected] _mimeTypes => array(
  		[maximum depth reached]
  	)
  	[protected] _protocol => 'HTTP/1.1'
  	[protected] _status => (int) 200
  	[protected] _contentType => 'text/html'
  	[protected] _headers => array([maximum depth reached])
  	[protected] _body => null
  	[protected] _file => null
  	[protected] _fileRange => null
  	[protected] _charset => 'UTF-8'
  	[protected] _cacheDirectives => array([maximum depth reached])
  	[protected] _cookies => array([maximum depth reached])
  }