ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: cold shock domain containing E1, RNA-binding
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000009307 CSDE1 9606 - 1:114716913-114758676 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261443 CSDE1-003 114717295-114757974 protein_coding
  ENST00000339438 CSDE1-001 114716913-114757983 protein_coding
  ENST00000358528 CSDE1-002 114716917-114757964 protein_coding
  ENST00000369530 CSDE1-004 114717312-114758003 protein_coding
  ENST00000438362 CSDE1-008 114716916-114750190 protein_coding
  ENST00000483030 CSDE1-006 114720216-114726348 retained_intron
  ENST00000483407 CSDE1-005 114717802-114718938 processed_transcript
  ENST00000524652 CSDE1-011 114749821-114757987 processed_transcript
  ENST00000525132 CSDE1-015 114736758-114757969 protein_coding
  ENST00000525878 CSDE1-010 114739753-114758676 protein_coding
  ENST00000525970 CSDE1-013 114739870-114757987 protein_coding
  ENST00000529046 CSDE1-014 114733769-114757987 protein_coding
  ENST00000530784 CSDE1-017 114720578-114724287 retained_intron
  ENST00000530886 CSDE1-007 114717305-114758027 protein_coding
  ENST00000533818 CSDE1-012 114748317-114757987 processed_transcript
  ENST00000534389 CSDE1-016 114737988-114746859 protein_coding
  ENST00000534699 CSDE1-009 114717957-114757982 protein_coding
  ENST00000610726 CSDE1-201 114716914-114758050 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000261443ENST00000339438ENST00000483407ENST00000525970ENST00000530886ENST00000534699
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000261443 N/A N/A N/A 48.583±0.00 28.964±8.55
ENST00000339438 34.603±11.96 53.241±21.90 22.177±0.00 69.926±0.00 53.658±21.43
ENST00000483407 40.579±0.00 N/A N/A N/A N/A
ENST00000525970 N/A N/A N/A N/A 435.357±51.28
ENST00000530886 N/A N/A N/A N/A 29.256±0.00
ENST00000534699 N/A 34.180±13.64 N/A 30.101±0.00 29.196±10.34

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005737 IDA cytoplasm
GO:0005743 IEA mitochondrial inner membrane
GO:0005794 IDA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008584 TAS male gonad development
GO:0044822 IDA poly(A) RNA binding
GO:0070937 IDA CRD-mediated mRNA stability complex
GO:0070966 IMP nuclear-transcribed mRNA catabolic process, no-go decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074758 csde1 protein_coding Danio_rerio
ENSMUSG00000068823 Csde1 protein_coding Mus_musculus

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