ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000068823 Csde1 10090 + 3:103020426-103058186 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029446 Csde1-001 103020426-103058186 protein_coding
  ENSMUST00000195889 Csde1-014 103040028-103046803 nonsense_mediated_decay
  ENSMUST00000196521 Csde1-009 103029095-103030897 retained_intron
  ENSMUST00000196685 Csde1-016 103050001-103051072 retained_intron
  ENSMUST00000197154 Csde1-012 103039740-103044639 processed_transcript
  ENSMUST00000197488 Csde1-007 103020664-103057804 protein_coding
  ENSMUST00000197827 Csde1-004 103020612-103057149 protein_coding
  ENSMUST00000197844 Csde1-017 103056054-103057132 retained_intron
  ENSMUST00000197939 Csde1-015 103043542-103044241 retained_intron
  ENSMUST00000198174 Csde1-010 103043193-103057786 nonsense_mediated_decay
  ENSMUST00000198180 Csde1-002 103020607-103057991 protein_coding
  ENSMUST00000198906 Csde1-008 103029002-103042757 retained_intron
  ENSMUST00000198944 Csde1-011 103030165-103043885 processed_transcript
  ENSMUST00000199240 Csde1-003 103020613-103057804 protein_coding
  ENSMUST00000199420 Csde1-005 103020613-103058186 protein_coding
  ENSMUST00000199571 Csde1-006 103020620-103057702 protein_coding
  ENSMUST00000200617 Csde1-013 103039999-103044064 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000029446ENSMUST00000197827ENSMUST00000198174ENSMUST00000198180ENSMUST00000199240ENSMUST00000199420ENSMUST00000199571
Transcript ID C166 Tie2+ EC mES
ENSMUST00000029446 15.984±1.87 15.040±2.04 36.088±5.96
ENSMUST00000197827 23.619±1.75 37.706±15.40 N/A
ENSMUST00000198174 N/A 20.899±0.00 N/A
ENSMUST00000198180 31.544±2.77 37.140±15.33 N/A
ENSMUST00000199240 12.887±0.00 N/A N/A
ENSMUST00000199420 N/A N/A 18.233±4.29
ENSMUST00000199571 N/A 11.766±0.00 N/A

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005737 IEA cytoplasm
GO:0005743 IDA mitochondrial inner membrane
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0044822 IEA poly(A) RNA binding
GO:0070937 IEA CRD-mediated mRNA stability complex
GO:0070966 IEA nuclear-transcribed mRNA catabolic process, no-go decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074758 csde1 protein_coding Danio_rerio
ENSG00000009307 CSDE1 cold shock domain containing E1, RNA-binding protein_coding Homo_sapiens

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