ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: lysine (K)-specific demethylase 5D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000012817 KDM5D 9606 - Y:19703865-19744939 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317961 KDM5D-001 19705415-19744923 protein_coding
  ENST00000382806 KDM5D-002 19705420-19744761 protein_coding
  ENST00000415360 KDM5D-009 19707182-19708949 protein_coding
  ENST00000440077 KDM5D-004 19706063-19744923 protein_coding
  ENST00000447300 KDM5D-003 19721272-19744711 protein_coding
  ENST00000469599 KDM5D-006 19703865-19716695 retained_intron
  ENST00000478891 KDM5D-008 19715136-19716348 retained_intron
  ENST00000485154 KDM5D-007 19709700-19710606 retained_intron
  ENST00000492117 KDM5D-005 19705425-19722467 retained_intron
  ENST00000541639 KDM5D-201 19705417-19744939 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000317961ENST00000382806ENST00000415360ENST00000440077ENST00000447300ENST00000469599ENST00000492117ENST00000541639
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000317961 0.585±0.00 1.033±0.94 N/A 3.949±0.00 5.684±7.59
ENST00000382806 1.260±0.29 0.458±0.23 15.274±0.00 5.634±0.00 0.888±0.74
ENST00000415360 N/A 0.762±0.00 N/A N/A N/A
ENST00000440077 N/A 0.001±0.00 N/A N/A 0.108±0.06
ENST00000447300 N/A N/A N/A N/A 0.013±0.00
ENST00000469599 N/A 0.119±0.00 5.567±0.00 N/A 2.852±2.82
ENST00000492117 N/A N/A N/A N/A 1.127±0.00
ENST00000541639 N/A 0.328±0.15 N/A N/A 0.985±0.00

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0032453 IDA histone demethylase activity (H3-K4 specific)
GO:0034720 IDA histone H3-K4 demethylation
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006124 kdm5c protein_coding Danio_rerio
ENSMUSG00000056673 Kdm5d protein_coding Mus_musculus

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