ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056673 Kdm5d 10090 + Y:897788-956786 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055032 Kdm5d-001 897790-946316 protein_coding
  ENSMUST00000185542 Kdm5d-007 899482-900934 retained_intron
  ENSMUST00000186696 Kdm5d-003 897795-941046 nonsense_mediated_decay
  ENSMUST00000186726 Kdm5d-002 897838-956786 nonsense_mediated_decay
  ENSMUST00000187296 Kdm5d-008 916529-943562 retained_intron
  ENSMUST00000188910 Kdm5d-005 897793-917330 retained_intron
  ENSMUST00000189069 Kdm5d-004 897788-917605 protein_coding
  ENSMUST00000189626 Kdm5d-006 898032-921980 retained_intron
  ENSMUST00000189955 Kdm5d-009 937783-940552 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000055032ENSMUST00000186696ENSMUST00000186726ENSMUST00000187296ENSMUST00000189626
Transcript ID C166 Tie2+ EC mES
ENSMUST00000055032 0.926±0.17 0.500±0.16 0.064±0.01
ENSMUST00000186696 1.985±0.43 0.876±0.00 N/A
ENSMUST00000186726 N/A N/A 0.026±0.00
ENSMUST00000187296 5.749±0.13 1.494±0.20 0.248±0.00
ENSMUST00000189626 N/A 2.516±0.00 N/A

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0008270 IEA zinc ion binding
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006124 kdm5c protein_coding Danio_rerio
ENSG00000012817 KDM5D lysine (K)-specific demethylase 5D protein_coding Homo_sapiens
ENSG00000278871 KDM5D lysine (K)-specific demethylase 5D protein_coding Homo_sapiens
ENSG00000280101 AC010889.1 protein_coding Homo_sapiens
ENSG00000280358 AC010889.2 protein_coding Homo_sapiens

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