ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: ring finger protein 10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000022840 RNF10 9606 + 12:120533480-120577594 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000325954 RNF10-001 120534351-120577594 protein_coding
  ENST00000366112 RNF10-010 120565096-120574938 retained_intron
  ENST00000413266 RNF10-002 120534812-120576886 protein_coding
  ENST00000535395 RNF10-019 120563748-120565527 retained_intron
  ENST00000535417 RNF10-025 120554350-120557368 retained_intron
  ENST00000535470 RNF10-014 120565436-120576882 processed_transcript
  ENST00000536869 RNF10-026 120534872-120557619 nonsense_mediated_decay
  ENST00000537376 RNF10-015 120560839-120563224 retained_intron
  ENST00000537740 RNF10-016 120560726-120563456 protein_coding
  ENST00000537997 RNF10-022 120535426-120552666 protein_coding
  ENST00000538254 RNF10-029 120565484-120576886 protein_coding
  ENST00000538796 RNF10-023 120534588-120557596 nonsense_mediated_decay
  ENST00000539486 RNF10-007 120533480-120534836 protein_coding
  ENST00000540046 RNF10-020 120563455-120566942 protein_coding
  ENST00000542207 RNF10-028 120554771-120563373 protein_coding
  ENST00000542438 RNF10-024 120534356-120562982 protein_coding
  ENST00000542701 RNF10-011 120570203-120577247 processed_transcript
  ENST00000543578 RNF10-027 120546457-120557404 processed_transcript
  ENST00000543675 RNF10-021 120557544-120563490 processed_transcript
  ENST00000543757 RNF10-008 120566953-120575950 processed_transcript
  ENST00000544124 RNF10-017 120563272-120563905 retained_intron
  ENST00000544805 RNF10-012 120575601-120576878 retained_intron
  ENST00000545419 RNF10-009 120563485-120576888 nonsense_mediated_decay
  ENST00000546262 RNF10-018 120560844-120566894 protein_coding
  ENST00000551139 RNF10-030 120534854-120554000 processed_transcript

Homo sapiens Ensembl GRCh38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000325954ENST00000413266ENST00000535470ENST00000538254ENST00000542207ENST00000544805ENST00000545419
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000325954 12.241±5.73 29.720±14.46 8.624±0.00 18.133±0.00 18.138±8.95
ENST00000413266 N/A 4.132±0.00 N/A 16.595±0.00 18.145±7.86
ENST00000535470 52.708±0.00 N/A N/A N/A N/A
ENST00000538254 76.594±20.96 N/A 41.267±0.00 N/A 71.540±12.16
ENST00000542207 N/A 224.511±48.31 N/A N/A 33.368±6.34
ENST00000544805 113.020±0.00 N/A 102.301±0.00 N/A N/A
ENST00000545419 34.720±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0009CQ CIL_0009CQ_0001 VISTA
CIL_0007ZA CIL_0007ZA_0001 VISTA
CIL_00075W CIL_00075W_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0010626 ISS negative regulation of Schwann cell proliferation
GO:0031643 ISS positive regulation of myelination
GO:0044212 ISS transcription regulatory region DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0051865 IDA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079687 rnf10 protein_coding Danio_rerio
ENSMUSG00000041740 Rnf10 protein_coding Mus_musculus

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