ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041740 Rnf10 10090 - 5:115241412-115272898 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040555 Rnf10-003 115241770-115272892 protein_coding
  ENSMUST00000112096 Rnf10-001 115241770-115272895 protein_coding
  ENSMUST00000112097 Rnf10-002 115241412-115272898 protein_coding
  ENSMUST00000128954 Rnf10-007 115243692-115246075 retained_intron
  ENSMUST00000133276 Rnf10-006 115251293-115255627 retained_intron
  ENSMUST00000139853 Rnf10-009 115241779-115272301 nonsense_mediated_decay
  ENSMUST00000151085 Rnf10-005 115251314-115260226 processed_transcript
  ENSMUST00000152613 Rnf10-004 115248693-115249487 processed_transcript
  ENSMUST00000153553 Rnf10-008 115241775-115242689 retained_intron
  ENSMUST00000200923 Rnf10-010 115270620-115272895 retained_intron
  ENSMUST00000202855 Rnf10-011 115256221-115257892 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000040555ENSMUST00000112096ENSMUST00000112097ENSMUST00000139853ENSMUST00000200923
Transcript ID C166 Tie2+ EC mES
ENSMUST00000040555 12.408±2.32 N/A 11.575±0.00
ENSMUST00000112096 51.713±4.18 36.010±29.13 19.442±5.18
ENSMUST00000112097 N/A N/A 34.856±1.34
ENSMUST00000139853 15.788±1.96 N/A 18.170±0.00
ENSMUST00000200923 N/A 5.692±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007ZA CIL_0007ZA_0002 VISTA
CIL_0009CQ CIL_0009CQ_0002 VISTA

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0010626 ISS negative regulation of Schwann cell proliferation
GO:0031643 ISS positive regulation of myelination
GO:0044212 ISS transcription regulatory region DNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0051865 IEA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079687 rnf10 protein_coding Danio_rerio
ENSG00000022840 RNF10 ring finger protein 10 protein_coding Homo_sapiens

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