ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: versican
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000038427 VCAN 9606 + 5:83471465-83582303 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265077 VCAN-001 83471465-83582303 protein_coding
  ENST00000342785 VCAN-201 83471674-83582303 protein_coding
  ENST00000343200 VCAN-202 83471674-83582303 protein_coding
  ENST00000502527 VCAN-005 83471925-83580448 protein_coding
  ENST00000503923 VCAN-008 83471618-83483604 retained_intron
  ENST00000505615 VCAN-012 83553362-83580400 retained_intron
  ENST00000507162 VCAN-011 83541948-83553474 processed_transcript
  ENST00000512590 VCAN-002 83471764-83581162 protein_coding
  ENST00000513016 VCAN-006 83535614-83581336 processed_transcript
  ENST00000513960 VCAN-003 83471777-83539684 protein_coding
  ENST00000513984 VCAN-007 83471791-83512940 protein_coding
  ENST00000515397 VCAN-010 83512102-83537247 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; HAoECHMVEC-DHUVECENST00000265077ENST00000343200ENST00000502527ENST00000505615ENST00000512590ENST00000513016ENST00000513960ENST00000513984ENST00000515397
Transcript ID HAoEC HMVEC-D HUVEC
ENST00000265077 0.206±0.08 0.102±0.00 0.046±0.04
ENST00000343200 0.486±0.18 N/A 0.449±1.07
ENST00000502527 N/A N/A 0.129±0.10
ENST00000505615 N/A 1.192±0.00 0.278±0.19
ENST00000512590 0.230±0.04 N/A 0.049±0.06
ENST00000513016 0.073±0.05 0.078±0.00 0.047±0.03
ENST00000513960 0.347±0.00 0.147±0.00 0.090±0.10
ENST00000513984 N/A N/A 0.020±0.00
ENST00000515397 N/A N/A 0.153±0.04

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0005509 IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005539 TAS glycosaminoglycan binding
GO:0005540 IEA hyaluronic acid binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0005796 TAS Golgi lumen
GO:0005975 TAS carbohydrate metabolic process
GO:0007155 IEA cell adhesion
GO:0007275 TAS multicellular organismal development
GO:0007507 IEA heart development
GO:0008037 TAS cell recognition
GO:0008347 IDA glial cell migration
GO:0016020 IDA membrane
GO:0030198 TAS extracellular matrix organization
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0030207 TAS chondroitin sulfate catabolic process
GO:0030208 TAS dermatan sulfate biosynthetic process
GO:0030246 IEA carbohydrate binding
GO:0031012 IDA extracellular matrix
GO:0043202 TAS lysosomal lumen
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000021614 Vcan protein_coding Mus_musculus

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