ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: ubiquitin specific peptidase 13 (isopeptidase T-3)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000058056 USP13 9606 + 3:179652755-179789401 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263966 USP13-001 179652755-179789401 protein_coding
  ENST00000482333 USP13-002 179653050-179757137 processed_transcript
  ENST00000496897 USP13-003 179653693-179784406 protein_coding
  ENST00000497155 USP13-006 179721564-179761151 protein_coding
  ENST00000497380 USP13-005 179653298-179708794 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHMVEC-DHUVECENST00000263966ENST00000482333ENST00000496897
Transcript ID BECs HAoEC HMVEC-D HUVEC
ENST00000263966 0.403±0.00 1.080±0.82 2.712±0.00 1.594±0.94
ENST00000482333 N/A N/A N/A 2.241±1.21
ENST00000496897 N/A 2.144±1.20 2.657±0.00 2.279±1.04

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00049V CIL_00049V_0002 CGP
CIL_0003YE CIL_0003YE_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004197 IMP cysteine-type endopeptidase activity
GO:0004221 IDA ubiquitin thiolesterase activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI:IEA protein binding
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006914 IEA autophagy
GO:0008242 IEA omega peptidase activity
GO:0008270 IEA zinc ion binding
GO:0008283 IMP cell proliferation
GO:0010506 IDA regulation of autophagy
GO:0030318 TAS melanocyte differentiation
GO:0031625 IPI ubiquitin protein ligase binding
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0043130 IDA ubiquitin binding
GO:0050821 IDA protein stabilization
GO:0070536 IDA protein K63-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079198 usp13 protein_coding Danio_rerio
ENSMUSG00000056900 Usp13 protein_coding Mus_musculus

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