ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056900 Usp13 10090 + 3:32817546-32938071 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000072312 Usp13-001 32817546-32938071 protein_coding
  ENSMUST00000108228 Usp13-002 32817571-32933286 protein_coding
  ENSMUST00000156769 Usp13-003 32915003-32933294 protein_coding
  ENSMUST00000172481 Usp13-004 32817711-32915033 nonsense_mediated_decay

Mus musculus Ensembl GRCm38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000072312ENSMUST00000108228ENSMUST00000156769ENSMUST00000172481
Transcript ID C166 Tie2+ EC mES
ENSMUST00000072312 1.631±0.23 0.035±0.01 0.365±0.00
ENSMUST00000108228 2.916±0.49 0.117±0.10 0.983±0.32
ENSMUST00000156769 N/A 1.461±0.00 N/A
ENSMUST00000172481 1.816±0.03 0.033±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00049V CIL_00049V_0003 CGP
CIL_0003YE CIL_0003YE_0003 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005575 ND cellular_component
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0006914 IEA autophagy
GO:0008234 IEA cysteine-type peptidase activity
GO:0008242 IEA omega peptidase activity
GO:0008270 IEA zinc ion binding
GO:0008283 ISS cell proliferation
GO:0010506 ISS regulation of autophagy
GO:0031625 IEA ubiquitin protein ligase binding
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0043130 ISS ubiquitin binding
GO:0050821 ISS protein stabilization
GO:0070536 ISS protein K63-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079198 usp13 protein_coding Danio_rerio
ENSG00000058056 USP13 ubiquitin specific peptidase 13 (isopeptidase T-3) protein_coding Homo_sapiens

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