ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: Treacher Collins-Franceschetti syndrome 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000070814 TCOF1 9606 + 5:150357639-150400308 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323668 TCOF1-001 150357672-150400308 protein_coding
  ENST00000377797 TCOF1-201 150357639-150400307 protein_coding
  ENST00000394269 TCOF1-004 150357718-150384249 protein_coding
  ENST00000427724 TCOF1-015 150357719-150398369 protein_coding
  ENST00000439160 TCOF1-002 150357714-150400042 protein_coding
  ENST00000445265 TCOF1-003 150357666-150400292 protein_coding
  ENST00000504761 TCOF1-014 150357747-150399048 protein_coding
  ENST00000506063 TCOF1-009 150378610-150379644 processed_transcript
  ENST00000506630 TCOF1-013 150389947-150392891 retained_intron
  ENST00000506767 TCOF1-012 150379276-150391795 nonsense_mediated_decay
  ENST00000513346 TCOF1-008 150357747-150399966 protein_coding
  ENST00000513538 TCOF1-010 150379656-150384253 protein_coding
  ENST00000514442 TCOF1-007 150374734-150394916 retained_intron
  ENST00000515035 TCOF1-006 150367573-150380859 retained_intron
  ENST00000515516 TCOF1-011 150357783-150399881 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000323668ENST00000377797ENST00000394269ENST00000427724ENST00000439160ENST00000445265ENST00000504761ENST00000513346ENST00000514442ENST00000515035ENST00000515516
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000323668 N/A N/A N/A N/A 2.826±1.66
ENST00000377797 2.953±0.00 4.751±2.22 N/A 3.851±0.00 2.926±2.04
ENST00000394269 N/A 1.907±0.78 N/A N/A 0.315±0.00
ENST00000427724 N/A 1.716±0.57 N/A N/A 1.463±0.37
ENST00000439160 2.072±0.00 2.096±1.09 N/A 4.366±0.00 2.738±2.35
ENST00000445265 N/A 6.809±3.26 2.438±0.00 1.481±0.00 2.959±2.01
ENST00000504761 N/A N/A N/A N/A 0.975±0.00
ENST00000513346 N/A N/A N/A N/A 1.542±0.27
ENST00000514442 N/A N/A N/A N/A 0.209±0.12
ENST00000515035 N/A N/A N/A N/A 0.182±0.09
ENST00000515516 20.671±0.00 N/A N/A N/A 14.668±3.47

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00091Q CIL_00091Q_0001 VISTA

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0005215 TAS transporter activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006810 IEA transport
GO:0042790 IEA transcription of nuclear large rRNA transcript from RNA polymerase I promoter
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000024613 Tcof1 protein_coding Mus_musculus

Loading