ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000073584 SMARCE1 9606 - 17:40624962-40648508 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000264640 SMARCE1-009 40629484-40632348 protein_coding
  ENST00000348513 SMARCE1-001 40624962-40648508 protein_coding
  ENST00000377808 SMARCE1-008 40628779-40647818 protein_coding
  ENST00000400122 SMARCE1-015 40628779-40647818 protein_coding
  ENST00000431889 SMARCE1-012 40628468-40647839 protein_coding
  ENST00000447024 SMARCE1-010 40630160-40632290 protein_coding
  ENST00000469334 SMARCE1-003 40628480-40647813 retained_intron
  ENST00000474246 SMARCE1-006 40640574-40647814 protein_coding
  ENST00000478349 SMARCE1-018 40630827-40647828 protein_coding
  ENST00000481231 SMARCE1-007 40635979-40647831 nonsense_mediated_decay
  ENST00000493660 SMARCE1-004 40634169-40647813 retained_intron
  ENST00000577721 SMARCE1-017 40635957-40647818 protein_coding
  ENST00000578044 SMARCE1-014 40628779-40647818 protein_coding
  ENST00000578112 SMARCE1-011 40627707-40647841 nonsense_mediated_decay
  ENST00000578995 SMARCE1-020 40635941-40637731 retained_intron
  ENST00000580419 SMARCE1-013 40628779-40647818 protein_coding
  ENST00000580654 SMARCE1-016 40635957-40647818 protein_coding
  ENST00000582955 SMARCE1-019 40636085-40647641 protein_coding
  ENST00000583294 SMARCE1-021 40636064-40636831 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000348513ENST00000431889ENST00000447024ENST00000469334ENST00000474246ENST00000481231ENST00000578044ENST00000578112ENST00000580419
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000348513 N/A 1.588±0.21 2.107±0.00 N/A 1.791±0.61
ENST00000431889 N/A N/A N/A N/A 11.328±5.51
ENST00000447024 28.097±0.00 N/A N/A N/A N/A
ENST00000469334 N/A N/A N/A N/A 7.729±5.17
ENST00000474246 N/A 5.123±0.00 N/A N/A 3.468±0.66
ENST00000481231 N/A N/A N/A N/A 71.115±6.93
ENST00000578044 33.425±2.90 N/A N/A N/A 9.055±0.00
ENST00000578112 16.288±3.90 18.868±4.71 29.664±0.00 33.348±0.00 15.325±9.85
ENST00000580419 N/A 17.153±3.69 N/A 27.963±0.00 23.530±9.33

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0005QY CIL_0005QY_0001 CGP
CIL_0004QH CIL_0004QH_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000228 TAS nuclear chromosome
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003682 TAS chromatin binding
GO:0003713 NAS transcription coactivator activity
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA chromatin remodeling
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0008080 IDA N-acetyltransferase activity
GO:0008152 IDA metabolic process
GO:0016514 IDA SWI/SNF complex
GO:0016922 IPI ligand-dependent nuclear receptor binding
GO:0017053 IPI transcriptional repressor complex
GO:0031492 IDA nucleosomal DNA binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0047485 IPI protein N-terminus binding
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016871 smarce1 protein_coding Danio_rerio
ENSMUSG00000037935 Smarce1 protein_coding Mus_musculus

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