ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: trinucleotide repeat containing 6C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000078687 TNRC6C 9606 + 17:78004168-78108835 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000301624 TNRC6C-201 78005056-78108835 protein_coding
  ENST00000335749 TNRC6C-202 78005056-78108835 protein_coding
  ENST00000585438 TNRC6C-007 78031522-78067910 protein_coding
  ENST00000587990 TNRC6C-009 78064894-78075385 retained_intron
  ENST00000588061 TNRC6C-002 78004168-78107464 protein_coding
  ENST00000588549 TNRC6C-004 78041047-78049349 protein_coding
  ENST00000588847 TNRC6C-001 78004168-78107464 protein_coding
  ENST00000591851 TNRC6C-003 78051067-78077779 retained_intron
  ENST00000592251 TNRC6C-008 78091367-78093299 retained_intron
  ENST00000592566 TNRC6C-006 78098342-78102821 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; HAoECHMVEC-DHUVECENST00000588061ENST00000588847
Transcript ID HAoEC HMVEC-D HUVEC
ENST00000588061 0.780±0.02 N/A 1.257±1.19
ENST00000588847 2.353±0.58 1.862±0.00 1.845±0.82

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007YS CIL_0007YS_0001 VISTA
CIL_00009V CIL_00009V_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001706 IEA endoderm formation
GO:0003723 IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0007173 TAS epidermal growth factor receptor signaling pathway
GO:0007219 TAS Notch signaling pathway
GO:0007492 IEA endoderm development
GO:0008543 TAS fibroblast growth factor receptor signaling pathway
GO:0010467 TAS gene expression
GO:0035162 IEA embryonic hemopoiesis
GO:0035278 TAS negative regulation of translation involved in gene silencing by miRNA
GO:0038095 TAS Fc-epsilon receptor signaling pathway
GO:0045087 TAS innate immune response
GO:0048011 TAS neurotrophin TRK receptor signaling pathway
GO:0048015 TAS phosphatidylinositol-mediated signaling
GO:0048568 IEA embryonic organ development
GO:0060213 IDA positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0060964 IEA regulation of gene silencing by miRNA
GO:1900153 IDA positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076847 tnrc6c1 protein_coding Danio_rerio
ENSMUSG00000025571 Tnrc6c protein_coding Mus_musculus

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