ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025571 Tnrc6c 10090 + 11:117654289-117763439 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026658 Tnrc6c-201 117654289-117763437 protein_coding
  ENSMUST00000106344 Tnrc6c-001 117654813-117763439 protein_coding
  ENSMUST00000138299 Tnrc6c-003 117721018-117762264 protein_coding
  ENSMUST00000140347 Tnrc6c-005 117742501-117749301 retained_intron
  ENSMUST00000141115 Tnrc6c-004 117654573-117763428 retained_intron
  ENSMUST00000141287 Tnrc6c-002 117749231-117751308 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000106344ENSMUST00000138299
Transcript ID C166 Tie2+ EC mES
ENSMUST00000106344 N/A 2.067±0.00 1.337±0.00
ENSMUST00000138299 2.727±0.54 1.308±0.03 1.069±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007YS CIL_0007YS_0002 VISTA
CIL_00009V CIL_00009V_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001706 IMP endoderm formation
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0006417 IEA regulation of translation
GO:0007492 IMP endoderm development
GO:0031047 IEA gene silencing by RNA
GO:0035162 IMP embryonic hemopoiesis
GO:0048568 IMP embryonic organ development
GO:0060213 ISS positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0060964 IMP regulation of gene silencing by miRNA
GO:1900153 ISS positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076847 tnrc6c1 protein_coding Danio_rerio
ENSG00000078687 TNRC6C trinucleotide repeat containing 6C protein_coding Homo_sapiens

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