ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: tudor domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000083544 TDRD3 9606 + 13:60396457-60573878 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000196169 TDRD3-201 60396457-60573878 protein_coding
  ENST00000377881 TDRD3-003 60397334-60573872 protein_coding
  ENST00000377882 TDRD3-005 60434049-60485899 protein_coding
  ENST00000377894 TDRD3-001 60396988-60573877 protein_coding
  ENST00000463109 TDRD3-004 60444687-60461040 processed_transcript
  ENST00000471710 TDRD3-006 60528963-60538086 retained_intron
  ENST00000484389 TDRD3-002 60396939-60528837 nonsense_mediated_decay
  ENST00000535286 TDRD3-202 60397293-60573878 protein_coding
  ENST00000621840 TDRD3-203 60434047-60573870 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHMVEC-DHUVECENST00000196169ENST00000377881ENST00000377882ENST00000377894ENST00000471710ENST00000535286ENST00000621840
Transcript ID BECs HAoEC HMVEC-D HUVEC
ENST00000196169 N/A 0.122±0.03 N/A 0.316±0.13
ENST00000377881 N/A 0.963±0.56 1.684±0.00 1.195±0.52
ENST00000377882 N/A N/A N/A 1.014±0.74
ENST00000377894 1.273±0.02 0.561±0.18 N/A 0.582±0.10
ENST00000471710 N/A 0.742±0.75 N/A 0.806±0.32
ENST00000535286 N/A 1.088±0.38 1.019±0.00 1.019±0.76
ENST00000621840 1.860±0.26 0.444±0.02 1.262±0.00 0.770±0.24

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0000MG CIL_0000MG_0001 CGP
CIL_0005KQ CIL_0005KQ_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0003713 IDA transcription coactivator activity
GO:0003723 IEA RNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0016568 IEA chromatin modification
GO:0035064 IDA methylated histone binding
GO:0035145 IDA exon-exon junction complex
GO:0044822 IDA poly(A) RNA binding
GO:2001141 IDA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025421 tdrd3 protein_coding Danio_rerio
ENSMUSG00000022019 Tdrd3 protein_coding Mus_musculus

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