ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: sec1 family domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000092108 SCFD1 9606 + 14:30622112-30735812 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000311943 SCFD1-009 30622327-30735772 nonsense_mediated_decay
  ENST00000396629 SCFD1-010 30622332-30735791 protein_coding
  ENST00000458591 SCFD1-006 30622112-30735812 protein_coding
  ENST00000463622 SCFD1-008 30622319-30735692 nonsense_mediated_decay
  ENST00000469043 SCFD1-001 30639777-30658358 protein_coding
  ENST00000484733 SCFD1-002 30622319-30735799 nonsense_mediated_decay
  ENST00000544052 SCFD1-004 30622319-30735789 protein_coding
  ENST00000553278 SCFD1-018 30669763-30673994 retained_intron
  ENST00000553280 SCFD1-025 30734494-30735794 retained_intron
  ENST00000553693 SCFD1-015 30622329-30650626 protein_coding
  ENST00000554437 SCFD1-022 30705824-30735799 nonsense_mediated_decay
  ENST00000554486 SCFD1-019 30676126-30705885 processed_transcript
  ENST00000554776 SCFD1-026 30628209-30653588 nonsense_mediated_decay
  ENST00000554819 SCFD1-017 30652338-30694858 processed_transcript
  ENST00000555259 SCFD1-005 30622311-30715970 nonsense_mediated_decay
  ENST00000555550 SCFD1-023 30721726-30722842 retained_intron
  ENST00000555953 SCFD1-021 30673273-30675331 retained_intron
  ENST00000556256 SCFD1-024 30721702-30735662 retained_intron
  ENST00000556413 SCFD1-016 30628209-30630917 retained_intron
  ENST00000556486 SCFD1-012 30715298-30735657 retained_intron
  ENST00000556534 SCFD1-020 30638197-30653981 retained_intron
  ENST00000556768 SCFD1-007 30622319-30735791 nonsense_mediated_decay
  ENST00000557076 SCFD1-014 30622328-30649583 protein_coding
  ENST00000557713 SCFD1-013 30622320-30638173 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000311943ENST00000458591ENST00000463622ENST00000544052ENST00000554437ENST00000554776ENST00000554819ENST00000556486ENST00000556768ENST00000557076
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000311943 2.047±0.00 1.764±0.31 N/A N/A 5.055±3.25
ENST00000458591 N/A 13.399±4.00 N/A N/A 5.264±3.54
ENST00000463622 N/A 2.551±1.16 N/A 13.203±0.00 4.231±2.43
ENST00000544052 N/A 3.344±1.50 N/A 11.832±0.00 4.723±3.17
ENST00000554437 18.844±0.34 5.602±1.36 48.308±0.00 N/A 11.723±0.00
ENST00000554776 N/A 3.599±0.00 N/A N/A N/A
ENST00000554819 N/A 9.770±1.90 N/A N/A N/A
ENST00000556486 N/A N/A 7.098±0.00 N/A N/A
ENST00000556768 1.957±0.00 4.184±1.80 4.438±0.00 N/A 4.106±0.35
ENST00000557076 N/A N/A N/A N/A 5.231±2.80

Conserved Regions

Region IDSub-RegionRegion Type
CIL_000893 CIL_000893_0001 VISTA
CIL_0003SX CIL_0003SX_0001 CGP
CIL_0007KV CIL_0007KV_0002 UCNEbase
CIL_0003T0 CIL_0003T0_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000902 ISS cell morphogenesis
GO:0001666 IEA response to hypoxia
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005798 ISS Golgi-associated vesicle
GO:0005801 IDA cis-Golgi network
GO:0005886 ISS plasma membrane
GO:0006890 ISS retrograde vesicle-mediated transport, Golgi to ER
GO:0006892 ISS post-Golgi vesicle-mediated transport
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0006909 ISS phagocytosis
GO:0009636 IEP response to toxic substance
GO:0015031 IEA protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0017119 ISS Golgi transport complex
GO:0019905 ISS syntaxin binding
GO:0031201 ISS SNARE complex
GO:0047485 IEA protein N-terminus binding
GO:0060628 ISS regulation of ER to Golgi vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000779 scfd1 protein_coding Danio_rerio
ENSMUSG00000020952 Scfd1 protein_coding Mus_musculus

Loading