ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: chromobox homolog 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000094916 CBX5 9606 - 12:54230940-54280133 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000209875 CBX5-002 54230940-54280102 protein_coding
  ENST00000439541 CBX5-004 54240625-54259592 protein_coding
  ENST00000547872 CBX5-006 54241747-54252525 retained_intron
  ENST00000550411 CBX5-003 54241755-54259545 protein_coding
  ENST00000552562 CBX5-005 54252091-54258427 protein_coding
  ENST00000618078 CBX5-007 54271841-54280133 processed_transcript

Homo sapiens Ensembl GRCh38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000209875ENST00000439541ENST00000550411
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000209875 3.540±0.85 16.983±3.80 2.297±0.00 12.021±0.00 12.134±6.56
ENST00000439541 N/A N/A N/A N/A 11.059±8.54
ENST00000550411 9.958±1.61 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007SU CIL_0007SU_0001 VISTA
CIL_00084M CIL_00084M_0001 VISTA
CIL_00003L CIL_00003L_0001 CGP
CIL_0002TM CIL_0002TM_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000118 ISS histone deacetylase complex
GO:0000776 IEA kinetochore
GO:0000792 IEA heterochromatin
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005635 TAS nuclear envelope
GO:0005654 TAS nucleoplasm
GO:0005720 TAS nuclear heterochromatin
GO:0005730 IDA nucleolus
GO:0007596 TAS blood coagulation
GO:0010369 IEA chromocenter
GO:0016032 IEA viral process
GO:0016605 IMP PML body
GO:0017053 ISS transcriptional repressor complex
GO:0030674 ISS protein binding, bridging
GO:0031618 NAS nuclear pericentric heterochromatin
GO:0035064 IDA methylated histone binding
GO:0035097 ISS histone methyltransferase complex
GO:0042803 IEA protein homodimerization activity
GO:0042826 IEA histone deacetylase binding
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0070491 ISS repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061187 cbx5 protein_coding Danio_rerio
ENSMUSG00000009575 Cbx5 protein_coding Mus_musculus

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