ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Transcript Info
Description: chromobox homolog 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000209875 CBX5-002 ENSG00000094916 9606 - 12:54230940-54280102 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000209875
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000209875 3.540±0.85 16.983±3.80 2.297±0.00 12.021±0.00 12.134±6.56

Conserved Regions

Not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 ISS histone deacetylase complex
GO:0000776 IEA kinetochore
GO:0000792 IEA heterochromatin
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005635 TAS nuclear envelope
GO:0005654 TAS nucleoplasm
GO:0005720 TAS nuclear heterochromatin
GO:0005730 IDA nucleolus
GO:0007596 TAS blood coagulation
GO:0010369 IEA chromocenter
GO:0016032 IEA viral process
GO:0016605 IMP PML body
GO:0017053 ISS transcriptional repressor complex
GO:0030674 ISS protein binding, bridging
GO:0031618 NAS nuclear pericentric heterochromatin
GO:0035064 IDA methylated histone binding
GO:0035097 ISS histone methyltransferase complex
GO:0042803 IEA protein homodimerization activity
GO:0042826 IEA histone deacetylase binding
GO:0045892 IMP negative regulation of transcription, DNA-templated
GO:0070491 ISS repressing transcription factor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118152 Cbx5-001 protein_coding Mus_musculus 0 1347
ENSMUST00000108813 Cbx5-002 protein_coding Mus_musculus 0 1288
ENSMUST00000122182 Cbx5-003 protein_coding Mus_musculus 0 1014
ENSMUST00000119518 Gm13005-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000108908 Scn8a-002 protein_coding Mus_musculus 1e-22 115
ENSMUST00000108909 Scn8a-001 protein_coding Mus_musculus 1e-22 115
ENSMUST00000108910 Scn8a-202 protein_coding Mus_musculus 1e-22 115
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 1e-22 115
ENSMUST00000124271 Acin1-019 retained_intron Mus_musculus 0.0000003 64

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