ANGIOGENES

ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info
Description:	splicing factor 3a, subunit 1, 120kDa
Gene Accession	Gene Name	Tax ID	Strand	Position	Gene Biotype
ENSG00000099995	SF3A1	9606	-	22:30331988-30356947	protein_coding
	Transcript Accession		Transcript Name	Position	Transcript Biotype
	ENST00000215793		SF3A1-001	30331988-30356947	protein_coding
	ENST00000411423		SF3A1-004	30337801-30356884	nonsense_mediated_decay
	ENST00000444440		SF3A1-011	30337817-30341850	protein_coding
	ENST00000447376		SF3A1-009	30342320-30356919	nonsense_mediated_decay
	ENST00000463818		SF3A1-003	30346221-30356891	retained_intron
	ENST00000471037		SF3A1-006	30342547-30345154	retained_intron
	ENST00000471342		SF3A1-005	30344910-30346489	retained_intron
	ENST00000485618		SF3A1-008	30338840-30340471	retained_intron
	ENST00000496189		SF3A1-002	30352545-30356894	retained_intron
	ENST00000498259		SF3A1-007	30338961-30340779	retained_intron

Expression Patterns

Transcript ID	BECs	HAoEC	HHSEC	HMVEC-D	HUVEC
ENST00000215793	3.748±0.00	33.041±11.69	4.021±0.00	15.344±0.00	13.135±8.75
ENST00000444440	N/A	N/A	N/A	N/A	36.264±5.28

Conserved Regions
Not located within a conserved region.

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0000389	TAS	mRNA 3'-splice site recognition
GO:0000398	IDA	mRNA splicing, via spliceosome
GO:0003723	IDA:IEA	RNA binding
GO:0005515	IPI:IEA	protein binding
GO:0005634	IDA	nucleus
GO:0005654	TAS	nucleoplasm
GO:0005681	IDA	spliceosomal complex
GO:0005684	IDA	U2-type spliceosomal complex
GO:0006396	IEA	RNA processing
GO:0006397	IMP	mRNA processing
GO:0008380	TAS	RNA splicing
GO:0010467	TAS	gene expression
GO:0044822	IDA	poly(A) RNA binding
GO:0071013	IDA	catalytic step 2 spliceosome

Homologs
ENSEMBL Accession	Gene Name	Description	Biotype	Species
ENSDARG00000041887	sf3a1		protein_coding	Danio_rerio
ENSMUSG00000002129	Sf3a1		protein_coding	Mus_musculus

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