ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: TRIO and F-actin binding protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100106 TRIOBP 9606 + 22:37697004-37776556 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000331103 TRIOBP-013 37754882-37755510 retained_intron
  ENST00000344404 TRIOBP-002 37697621-37774048 nonsense_mediated_decay
  ENST00000403663 TRIOBP-006 37746233-37774140 protein_coding
  ENST00000406386 TRIOBP-001 37697004-37776556 protein_coding
  ENST00000407319 TRIOBP-005 37746228-37760346 protein_coding
  ENST00000413051 TRIOBP-009 37746322-37757963 nonsense_mediated_decay
  ENST00000417857 TRIOBP-010 37751398-37758047 protein_coding
  ENST00000418339 TRIOBP-008 37750997-37757982 protein_coding
  ENST00000428075 TRIOBP-012 37746270-37758135 protein_coding
  ENST00000452519 TRIOBP-011 37751385-37755574 protein_coding
  ENST00000492485 TRIOBP-003 37697621-37726570 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000403663ENST00000406386ENST00000417857ENST00000492485
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000403663 14.065±0.00 41.576±28.85 24.246±0.00 53.155±0.00 36.786±20.19
ENST00000406386 N/A 1.526±1.27 N/A N/A 2.481±1.20
ENST00000417857 N/A N/A N/A N/A 9.327±2.52
ENST00000492485 N/A 3.456±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00099H CIL_00099H_0001 VISTA
CIL_0008KJ CIL_0008KJ_0001 VISTA
CIL_00040B CIL_00040B_0001 CGP
CIL_0008BX CIL_0008BX_0001 VISTA
CIL_0001D1 CIL_0001D1_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005925 IDA focal adhesion
GO:0007067 IEA mitotic nuclear division
GO:0015629 IDA actin cytoskeleton
GO:0017049 NAS GTP-Rho binding
GO:0030047 NAS actin modification
GO:0031625 IPI ubiquitin protein ligase binding
GO:0045159 NAS myosin II binding
GO:0051015 IDA actin filament binding
GO:0051016 NAS barbed-end actin filament capping
GO:1900026 IDA positive regulation of substrate adhesion-dependent cell spreading

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006385 triobpb protein_coding Danio_rerio
ENSDARG00000075870 triobpa protein_coding Danio_rerio
ENSMUSG00000033088 Triobp protein_coding Mus_musculus

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