ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: crooked neck pre-mRNA splicing factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101343 CRNKL1 9606 - 20:20034368-20056046 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000377327 CRNKL1-001 20034368-20056046 protein_coding
  ENST00000377340 CRNKL1-002 20034368-20056046 protein_coding
  ENST00000490258 CRNKL1-005 20036142-20038611 retained_intron
  ENST00000490910 CRNKL1-003 20034368-20056046 nonsense_mediated_decay
  ENST00000496549 CRNKL1-004 20034368-20056046 nonsense_mediated_decay
  ENST00000521379 CRNKL1-006 20036006-20038452 processed_transcript
  ENST00000536226 CRNKL1-007 20034374-20052466 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000490258ENST00000521379ENST00000536226
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000490258 23.099±0.69 N/A 9.264±0.00 N/A N/A
ENST00000521379 N/A 6.048±4.18 N/A N/A N/A
ENST00000536226 2.621±1.17 6.996±3.41 0.933±0.00 7.483±0.00 4.737±2.50

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007Z5 CIL_0007Z5_0001 VISTA
CIL_0002MS CIL_0002MS_0001 CGP
CIL_0001TY CIL_0001TY_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 IDA spliceosomal complex assembly
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003723 IDA RNA binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005681 IDA spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006396 IEA RNA processing
GO:0006397 IEA mRNA processing
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007901 crnkl1 protein_coding Danio_rerio
ENSMUSG00000001767 Crnkl1 protein_coding Mus_musculus
ENSMUSG00000092012 Gm4782 protein_coding Mus_musculus

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