Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]
Warning (512): _cake_model_ cache was unable to write 'default_angiogenes_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]
Warning (512): _cake_model_ cache was unable to write 'default_angiogenes_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]
Warning (512): _cake_model_ cache was unable to write 'default_angiogenes_genes' to File cache [CORE/Cake/Cache/Cache.php, line 323]
Warning (512): _cake_model_ cache was unable to write 'default_angiogenes_genes' to File cache [CORE/Cake/Cache/Cache.php, line 323]
ANGIOGENES

ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108604 SMARCD2 9606 - 17:63832081-63843065 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000225742 SMARCD2-002 63832604-63842466 protein_coding
  ENST00000323347 SMARCD2-003 63832502-63838728 protein_coding
  ENST00000448276 SMARCD2-001 63832084-63842940 protein_coding
  ENST00000450364 SMARCD2-012 63832639-63834744 protein_coding
  ENST00000577686 SMARCD2-008 63836746-63842510 retained_intron
  ENST00000577990 SMARCD2-005 63842466-63843065 protein_coding
  ENST00000578234 SMARCD2-009 63834178-63835657 retained_intron
  ENST00000580054 SMARCD2-007 63835491-63837625 nonsense_mediated_decay
  ENST00000581832 SMARCD2-011 63834362-63835052 retained_intron
  ENST00000584400 SMARCD2-006 63833912-63842698 nonsense_mediated_decay
  ENST00000584483 SMARCD2-010 63833705-63835145 retained_intron
  ENST00000613943 SMARCD2-201 63832081-63842674 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000225742ENST00000323347ENST00000448276ENST00000450364ENST00000584483ENST00000613943
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000225742 N/A 4.320±2.55 N/A N/A 5.996±5.65
ENST00000323347 N/A N/A N/A N/A 2.666±0.00
ENST00000448276 3.480±0.00 10.887±6.67 N/A 5.629±0.00 8.064±7.23
ENST00000450364 N/A 13.956±2.31 N/A N/A N/A
ENST00000584483 N/A N/A N/A N/A 0.608±0.00
ENST00000613943 15.683±9.22 20.386±7.13 25.010±0.00 16.976±0.00 9.056±5.10

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0009B9 CIL_0009B9_0001 VISTA
CIL_0006QA CIL_0006QA_0001 CGP

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003713 NAS transcription coactivator activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0016514 IDA SWI/SNF complex
GO:0031492 IDA nucleosomal DNA binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088877 smarcd2 protein_coding Danio_rerio
ENSMUSG00000078619 Smarcd2 protein_coding Mus_musculus

Loading

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]
Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]