ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000078619 Smarcd2 10090 - 11:106263179-106272972 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021052 Smarcd2-001 106263179-106272972 protein_coding
  ENSMUST00000106841 Smarcd2-006 106263799-106264936 retained_intron
  ENSMUST00000106843 Smarcd2-002 106263179-106267799 protein_coding
  ENSMUST00000132278 Smarcd2-004 106264733-106266071 retained_intron
  ENSMUST00000140255 Smarcd2-009 106264019-106265746 protein_coding
  ENSMUST00000155243 Smarcd2-003 106265312-106272965 processed_transcript
  ENSMUST00000155514 Smarcd2-005 106263714-106265662 retained_intron
  ENSMUST00000174017 Smarcd2-008 106266891-106267528 retained_intron
  ENSMUST00000174253 Smarcd2-007 106265739-106267483 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000021052ENSMUST00000106843ENSMUST00000132278
Transcript ID C166 Tie2+ EC mES
ENSMUST00000021052 22.306±3.71 18.130±6.64 13.735±0.32
ENSMUST00000106843 6.224±0.00 5.477±0.00 N/A
ENSMUST00000132278 N/A 10.663±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0009B9 CIL_0009B9_0002 VISTA
CIL_0006QA CIL_0006QA_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0005634 IEA nucleus
GO:0006337 IEA nucleosome disassembly
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016514 IEA SWI/SNF complex
GO:0031492 IEA nucleosomal DNA binding
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088877 smarcd2 protein_coding Danio_rerio
ENSG00000108604 SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein_coding Homo_sapiens

Loading