ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: structural maintenance of chromosomes 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113810 SMC4 9606 + 3:160399274-160434962 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000344722 SMC4-007 160400482-160434953 protein_coding
  ENST00000357388 SMC4-001 160399304-160434962 protein_coding
  ENST00000462668 SMC4-008 160414023-160434954 retained_intron
  ENST00000462787 SMC4-006 160399668-160433990 protein_coding
  ENST00000465563 SMC4-019 160411758-160414517 retained_intron
  ENST00000465903 SMC4-010 160399638-160402867 protein_coding
  ENST00000467263 SMC4-021 160412335-160413754 retained_intron
  ENST00000467468 SMC4-014 160399650-160411964 protein_coding
  ENST00000468653 SMC4-002 160399650-160414500 retained_intron
  ENST00000469762 SMC4-003 160399650-160433910 protein_coding
  ENST00000469858 SMC4-004 160399651-160424947 nonsense_mediated_decay
  ENST00000470240 SMC4-017 160402809-160412852 processed_transcript
  ENST00000472282 SMC4-013 160399643-160412453 processed_transcript
  ENST00000472991 SMC4-012 160399643-160412025 protein_coding
  ENST00000484799 SMC4-027 160417624-160419502 retained_intron
  ENST00000485645 SMC4-011 160399639-160404336 protein_coding
  ENST00000485867 SMC4-016 160399669-160404504 protein_coding
  ENST00000486711 SMC4-025 160430929-160432443 retained_intron
  ENST00000487747 SMC4-026 160404499-160416403 processed_transcript
  ENST00000488017 SMC4-024 160428796-160431043 retained_intron
  ENST00000489573 SMC4-005 160399666-160414515 protein_coding
  ENST00000490207 SMC4-015 160399669-160404358 protein_coding
  ENST00000493695 SMC4-022 160414438-160416627 retained_intron
  ENST00000494612 SMC4-020 160412022-160413583 processed_transcript
  ENST00000497203 SMC4-023 160420582-160423594 retained_intron
  ENST00000497311 SMC4-009 160399274-160404336 protein_coding
  ENST00000497984 SMC4-018 160403991-160413484 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000462787ENST00000469762ENST00000497311
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000462787 N/A 7.165±0.89 N/A N/A 3.677±1.91
ENST00000469762 1.590±0.00 7.914±7.73 3.313±0.00 16.043±0.00 12.463±8.24
ENST00000497311 N/A N/A N/A N/A 13.487±2.87

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0004JR CIL_0004JR_0002 CGP
CIL_0004JQ CIL_0004JQ_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000070 TAS mitotic sister chromatid segregation
GO:0000278 TAS mitotic cell cycle
GO:0000796 IDA condensin complex
GO:0004888 IEA transmembrane signaling receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005524 TAS:IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 IEA chromosome
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006935 IEA chemotaxis
GO:0007076 IDA mitotic chromosome condensation
GO:0007165 IEA signal transduction
GO:0010032 IEA meiotic chromosome condensation
GO:0016020 IEA membrane
GO:0045132 IEA meiotic chromosome segregation
GO:0046982 IPI protein heterodimerization activity
GO:0051276 IEA chromosome organization
GO:0051383 IEA kinetochore organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038882 smc4 protein_coding Danio_rerio
ENSMUSG00000034349 Smc4 protein_coding Mus_musculus

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