ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034349 Smc4 10090 + 3:69004738-69034623 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042901 Smc4-001 69004738-69034623 protein_coding
  ENSMUST00000107803 Smc4-004 69004991-69034618 protein_coding
  ENSMUST00000124983 Smc4-006 69016696-69019327 processed_transcript
  ENSMUST00000128118 Smc4-009 69030373-69033083 retained_intron
  ENSMUST00000128134 Smc4-005 69016490-69018173 retained_intron
  ENSMUST00000136502 Smc4-003 69004970-69018108 protein_coding
  ENSMUST00000148385 Smc4-002 69005008-69034623 nonsense_mediated_decay
  ENSMUST00000149174 Smc4-008 69024194-69027900 nonsense_mediated_decay
  ENSMUST00000156354 Smc4-007 69018915-69021400 retained_intron
  ENSMUST00000194693 Smc4-011 69022048-69024301 retained_intron
  ENSMUST00000195525 Smc4-010 69005015-69028455 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000042901ENSMUST00000107803ENSMUST00000148385
Transcript ID C166 Tie2+ EC mES
ENSMUST00000042901 8.168±3.22 4.063±0.44 27.777±7.82
ENSMUST00000107803 7.782±4.05 2.963±1.28 7.560±2.90
ENSMUST00000148385 11.658±4.37 4.642±4.53 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0004JR CIL_0004JR_0003 CGP
CIL_0004JQ CIL_0004JQ_0003 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000796 IEA condensin complex
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0005737 IEA cytoplasm
GO:0007076 ISS mitotic chromosome condensation
GO:0010032 IMP meiotic chromosome condensation
GO:0045132 IMP meiotic chromosome segregation
GO:0046982 ISS protein heterodimerization activity
GO:0051383 IMP kinetochore organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038882 smc4 protein_coding Danio_rerio
ENSG00000113810 SMC4 structural maintenance of chromosomes 4 protein_coding Homo_sapiens

Loading