ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: sorting nexin 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115234 SNX17 9606 + 2:27370496-27377533 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000233575 SNX17-001 27370522-27377128 protein_coding
  ENST00000427123 SNX17-003 27370628-27377123 nonsense_mediated_decay
  ENST00000440760 SNX17-002 27370617-27377127 nonsense_mediated_decay
  ENST00000453453 SNX17-005 27370665-27377128 nonsense_mediated_decay
  ENST00000464279 SNX17-008 27370644-27373439 retained_intron
  ENST00000484886 SNX17-006 27370615-27371644 retained_intron
  ENST00000489402 SNX17-007 27370646-27373129 retained_intron
  ENST00000493711 SNX17-009 27374408-27375597 retained_intron
  ENST00000494893 SNX17-004 27370620-27375521 retained_intron
  ENST00000537606 SNX17-201 27370496-27377533 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000233575ENST00000453453ENST00000484886ENST00000537606
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000233575 21.789±11.66 58.713±20.16 N/A 65.184±0.00 54.636±41.55
ENST00000453453 64.134±1.22 N/A 36.134±0.00 N/A 20.140±0.00
ENST00000484886 N/A N/A N/A N/A 1.641±0.00
ENST00000537606 N/A N/A N/A N/A 6.969±6.69

Conserved Regions

Region IDSub-RegionRegion Type
CIL_000133 CIL_000133_0001 CGP
CIL_0001DJ CIL_0001DJ_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005102 NAS receptor binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IDA endosome
GO:0005769 IDA early endosome
GO:0005794 IDA Golgi apparatus
GO:0005829 IDA cytosol
GO:0006707 IC cholesterol catabolic process
GO:0006886 NAS intracellular protein transport
GO:0006898 IEA receptor-mediated endocytosis
GO:0007165 IEA signal transduction
GO:0008022 IPI protein C-terminus binding
GO:0010008 IDA endosome membrane
GO:0016020 NAS membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016197 NAS endosomal transport
GO:0030100 NAS regulation of endocytosis
GO:0035091 IDA:IEA phosphatidylinositol binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043234 IDA protein complex
GO:0050750 IDA low-density lipoprotein particle receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091418 snx17 protein_coding Danio_rerio
ENSMUSG00000029146 Snx17 protein_coding Mus_musculus

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