ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029146 Snx17 10090 + 5:31193227-31199143 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031029 Snx17-001 31193227-31198900 protein_coding
  ENSMUST00000200730 Snx17-002 31193294-31198894 nonsense_mediated_decay
  ENSMUST00000201343 Snx17-009 31196050-31198144 processed_transcript
  ENSMUST00000201535 Snx17-006 31193306-31197056 protein_coding
  ENSMUST00000201679 Snx17-005 31193242-31195434 protein_coding
  ENSMUST00000201835 Snx17-008 31195842-31197710 retained_intron
  ENSMUST00000202032 Snx17-012 31193854-31199143 retained_intron
  ENSMUST00000202124 Snx17-003 31193335-31198900 nonsense_mediated_decay
  ENSMUST00000202318 Snx17-013 31195373-31197250 retained_intron
  ENSMUST00000202323 Snx17-004 31193306-31198899 retained_intron
  ENSMUST00000202743 Snx17-007 31194843-31196434 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000031029ENSMUST00000202032ENSMUST00000202124
Transcript ID C166 Tie2+ EC mES
ENSMUST00000031029 43.045±3.23 44.176±28.64 12.366±3.41
ENSMUST00000202032 N/A 4.814±0.37 18.372±4.00
ENSMUST00000202124 N/A 8.377±1.10 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0001DH CIL_0001DH_0002 CGP
CIL_000133 CIL_000133_0002 CGP
CIL_0001DJ CIL_0001DJ_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IPI endosome
GO:0005769 IEA early endosome
GO:0005794 IEA Golgi apparatus
GO:0005829 ISS cytosol
GO:0005856 IEA cytoskeleton
GO:0006898 IDA receptor-mediated endocytosis
GO:0007165 IEA signal transduction
GO:0008022 IEA protein C-terminus binding
GO:0010008 ISO endosome membrane
GO:0015031 IEA protein transport
GO:0016023 ISS cytoplasmic membrane-bounded vesicle
GO:0035091 ISS phosphatidylinositol binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043234 ISO protein complex
GO:0050750 IEA low-density lipoprotein particle receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091418 snx17 protein_coding Danio_rerio
ENSG00000115234 SNX17 sorting nexin 17 protein_coding Homo_sapiens

Loading