ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: pleckstrin and Sec7 domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125637 PSD4 9606 + 2:113157325-113209396 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000245796 PSD4-001 113173971-113203237 protein_coding
  ENST00000409378 PSD4-010 113196280-113201330 protein_coding
  ENST00000409656 PSD4-004 113185044-113201566 nonsense_mediated_decay
  ENST00000418251 PSD4-002 113173980-113203225 retained_intron
  ENST00000441564 PSD4-003 113173997-113209396 protein_coding
  ENST00000460725 PSD4-005 113197195-113202912 retained_intron
  ENST00000464559 PSD4-006 113198558-113202912 retained_intron
  ENST00000465592 PSD4-011 113197342-113198830 retained_intron
  ENST00000465917 PSD4-012 113157325-113183044 processed_transcript
  ENST00000485525 PSD4-007 113173972-113185750 processed_transcript
  ENST00000487574 PSD4-009 113196149-113198189 retained_intron
  ENST00000493329 PSD4-008 113193848-113196607 retained_intron

Homo sapiens Ensembl GRCh38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000245796ENST00000409378ENST00000409656ENST00000441564ENST00000460725ENST00000464559ENST00000485525
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000245796 N/A 0.125±0.05 N/A N/A 0.010±0.00
ENST00000409378 N/A 0.328±0.01 N/A N/A 0.161±0.02
ENST00000409656 N/A 0.094±0.04 N/A N/A 0.034±0.00
ENST00000441564 0.067±0.01 0.084±0.03 0.371±0.00 0.081±0.00 0.026±0.03
ENST00000460725 N/A N/A N/A N/A 0.052±0.00
ENST00000464559 0.106±0.06 0.166±0.11 1.792±0.00 0.118±0.00 0.049±0.01
ENST00000485525 N/A N/A N/A N/A 0.214±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_000191 CIL_000191_0001 CGP
CIL_000196 CIL_000196_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005086 IBA:IEA ARF guanyl-nucleotide exchange factor activity
GO:0005543 IEA phospholipid binding
GO:0005886 IEA plasma membrane
GO:0016020 IDA membrane
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000026979 Psd4 protein_coding Mus_musculus

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