ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026979 Psd4 10090 + 2:24367580-24414954 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056641 Psd4-002 24385332-24408729 protein_coding
  ENSMUST00000102942 Psd4-001 24367610-24414954 protein_coding
  ENSMUST00000127242 Psd4-007 24386569-24394591 protein_coding
  ENSMUST00000131930 Psd4-006 24385353-24394305 protein_coding
  ENSMUST00000132924 Psd4-008 24405629-24407007 retained_intron
  ENSMUST00000133730 Psd4-005 24385336-24397320 processed_transcript
  ENSMUST00000140303 Psd4-009 24401036-24403252 nonsense_mediated_decay
  ENSMUST00000140547 Psd4-003 24367580-24394258 protein_coding
  ENSMUST00000142522 Psd4-004 24385335-24394411 protein_coding
  ENSMUST00000166388 Psd4-201 24386617-24408200 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000056641ENSMUST00000102942ENSMUST00000131930ENSMUST00000132924ENSMUST00000133730ENSMUST00000140547ENSMUST00000166388
Transcript ID C166 Tie2+ EC mES
ENSMUST00000056641 0.028±0.02 0.078±0.03 0.030±0.01
ENSMUST00000102942 0.008±0.00 0.006±0.00 0.008±0.00
ENSMUST00000131930 N/A N/A 0.172±0.00
ENSMUST00000132924 0.545±0.00 N/A N/A
ENSMUST00000133730 N/A N/A 0.111±0.00
ENSMUST00000140547 N/A N/A 0.311±0.05
ENSMUST00000166388 0.053±0.04 0.047±0.00 0.044±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_000191 CIL_000191_0002 CGP
CIL_000196 CIL_000196_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005086 IBA ARF guanyl-nucleotide exchange factor activity
GO:0005886 IEA plasma membrane
GO:0008289 IEA lipid binding
GO:0016020 IEA membrane
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000125637 PSD4 pleckstrin and Sec7 domain containing 4 protein_coding Homo_sapiens

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