ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: coiled-coil domain containing 40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000141519 CCDC40 9606 + 17:80036632-80100613 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000269318 CCDC40-002 80036652-80067901 protein_coding
  ENST00000374876 CCDC40-003 80036658-80066770 protein_coding
  ENST00000374877 CCDC40-201 80036632-80090819 protein_coding
  ENST00000397545 CCDC40-001 80036636-80100613 protein_coding
  ENST00000571028 CCDC40-012 80058925-80067288 protein_coding
  ENST00000572083 CCDC40-010 80036664-80040535 retained_intron
  ENST00000572253 CCDC40-005 80081443-80097934 retained_intron
  ENST00000572270 CCDC40-008 80036652-80040165 processed_transcript
  ENST00000573474 CCDC40-011 80040005-80050224 nonsense_mediated_decay
  ENST00000573903 CCDC40-014 80088105-80092145 processed_transcript
  ENST00000574099 CCDC40-007 80036661-80040187 protein_coding
  ENST00000574799 CCDC40-004 80048370-80100604 retained_intron
  ENST00000574933 CCDC40-016 80087703-80088212 retained_intron
  ENST00000575431 CCDC40-013 80087514-80095337 retained_intron
  ENST00000576033 CCDC40-009 80036661-80040105 protein_coding
  ENST00000576241 CCDC40-015 80036677-80047454 retained_intron

Homo sapiens Ensembl GRCh38

Genome
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Sequences
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Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000269318ENST00000374876ENST00000374877ENST00000397545ENST00000572083ENST00000572253ENST00000572270ENST00000573474ENST00000574099ENST00000574799ENST00000576033ENST00000576241
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000269318 N/A 0.564±0.32 N/A 0.129±0.00 0.191±0.08
ENST00000374876 N/A 0.197±0.11 0.530±0.00 N/A 0.119±0.07
ENST00000374877 N/A 0.115±0.00 N/A N/A 0.089±0.06
ENST00000397545 N/A N/A N/A N/A 0.053±0.01
ENST00000572083 0.894±0.00 0.376±0.10 N/A N/A 0.525±0.36
ENST00000572253 N/A 0.063±0.01 0.395±0.00 0.095±0.00 0.049±0.03
ENST00000572270 N/A 0.878±0.00 N/A N/A 0.637±0.44
ENST00000573474 N/A N/A N/A 0.495±0.00 0.467±0.27
ENST00000574099 N/A 1.757±0.00 N/A N/A 0.874±0.00
ENST00000574799 N/A 0.050±0.00 N/A N/A N/A
ENST00000576033 N/A N/A N/A N/A 1.161±0.00
ENST00000576241 0.566±0.00 2.394±0.65 N/A 0.482±0.00 0.421±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_000040 CIL_000040_0001 CGP
CIL_00003V CIL_00003V_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001947 IMP heart looping
GO:0003341 IEA cilium movement
GO:0003351 IMP epithelial cilium movement
GO:0003356 IMP regulation of cilium beat frequency
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0005929 ISS cilium
GO:0030324 IMP lung development
GO:0035469 IMP determination of pancreatic left/right asymmetry
GO:0060287 IMP epithelial cilium movement involved in determination of left/right asymmetry
GO:0070286 IMP axonemal dynein complex assembly
GO:0071907 IMP determination of digestive tract left/right asymmetry
GO:0071910 IMP determination of liver left/right asymmetry

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000039963 Ccdc40 protein_coding Mus_musculus

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