ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039963 Ccdc40 10090 + 11:119228572-119265236 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035935 Ccdc40-001 119228572-119265212 protein_coding
  ENSMUST00000053440 Ccdc40-002 119229129-119262900 protein_coding
  ENSMUST00000125724 Ccdc40-007 119262872-119264306 retained_intron
  ENSMUST00000126652 Ccdc40-003 119258927-119265236 processed_transcript
  ENSMUST00000133788 Ccdc40-005 119253553-119264436 retained_intron
  ENSMUST00000143066 Ccdc40-004 119238718-119251809 retained_intron
  ENSMUST00000147037 Ccdc40-011 119228605-119231644 processed_transcript
  ENSMUST00000150358 Ccdc40-010 119228599-119231728 processed_transcript
  ENSMUST00000155683 Ccdc40-006 119259766-119263120 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000053440ENSMUST00000126652ENSMUST00000133788
Transcript ID C166 Tie2+ EC mES
ENSMUST00000053440 0.047±0.03 0.026±0.00 0.098±0.00
ENSMUST00000126652 0.185±0.09 0.075±0.04 0.394±0.04
ENSMUST00000133788 N/A 0.101±0.05 0.184±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_000040 CIL_000040_0002 CGP
CIL_00003V CIL_00003V_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001947 IEA heart looping
GO:0003341 IMP cilium movement
GO:0003351 IEA epithelial cilium movement
GO:0003356 IEA regulation of cilium beat frequency
GO:0003674 ND molecular_function
GO:0005737 IDA cytoplasm
GO:0005929 IDA cilium
GO:0030324 IMP lung development
GO:0035469 IEA determination of pancreatic left/right asymmetry
GO:0060287 IMP epithelial cilium movement involved in determination of left/right asymmetry
GO:0070286 ISS axonemal dynein complex assembly
GO:0071907 IEA determination of digestive tract left/right asymmetry
GO:0071910 IEA determination of liver left/right asymmetry

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000141519 CCDC40 coiled-coil domain containing 40 protein_coding Homo_sapiens

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