ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: PR domain containing 16
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000142611 PRDM16 9606 + 1:3069168-3438621 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000270722 PRDM16-001 3069211-3438621 protein_coding
  ENST00000378389 PRDM16-005 3424919-3434095 processed_transcript
  ENST00000378391 PRDM16-003 3069197-3435421 protein_coding
  ENST00000463591 PRDM16-004 3244132-3386918 protein_coding
  ENST00000509860 PRDM16-002 3396491-3434293 protein_coding
  ENST00000511072 PRDM16-007 3069168-3434342 protein_coding
  ENST00000512462 PRDM16-009 3237931-3433925 processed_transcript
  ENST00000514189 PRDM16-008 3069211-3434342 protein_coding
  ENST00000606170 PRDM16-011 3425216-3426072 retained_intron
  ENST00000607632 PRDM16-010 3069183-3186591 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHUVECENST00000270722ENST00000378389ENST00000378391ENST00000463591ENST00000509860ENST00000511072ENST00000512462ENST00000606170ENST00000607632
Transcript ID BECs HAoEC HHSEC HUVEC
ENST00000270722 N/A 0.017±0.02 0.007±0.00 0.007±0.00
ENST00000378389 N/A 0.091±0.00 0.057±0.00 0.016±0.00
ENST00000378391 N/A 0.034±0.02 N/A 0.010±0.00
ENST00000463591 N/A 0.187±0.00 N/A N/A
ENST00000509860 N/A N/A N/A 0.006±0.00
ENST00000511072 N/A 0.014±0.01 N/A N/A
ENST00000512462 N/A 0.046±0.01 N/A 0.006±0.00
ENST00000606170 0.087±0.00 0.316±0.22 0.955±0.00 0.182±0.16
ENST00000607632 N/A 0.365±0.31 N/A N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0007XZ CIL_0007XZ_0001 VISTA
CIL_0007TB CIL_0007TB_0001 VISTA
CIL_00099V CIL_00099V_0001 VISTA

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003713 ISS transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0017053 ISS transcriptional repressor complex
GO:0022008 IEA neurogenesis
GO:0030512 IDA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030853 IDA negative regulation of granulocyte differentiation
GO:0035019 IEA somatic stem cell maintenance
GO:0043457 ISS regulation of cellular respiration
GO:0043565 IDA sequence-specific DNA binding
GO:0043586 IEA tongue development
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046332 IEA SMAD binding
GO:0046872 IEA metal ion binding
GO:0050872 IEA white fat cell differentiation
GO:0050873 ISS brown fat cell differentiation
GO:0060021 IEA palate development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078324 PRDM16 protein_coding Danio_rerio
ENSMUSG00000039410 Prdm16 protein_coding Mus_musculus

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