ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039410 Prdm16 10090 - 4:154316125-154636873 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030902 Prdm16-001 154316125-154636866 protein_coding
  ENSMUST00000070313 Prdm16-003 154316125-154636866 protein_coding
  ENSMUST00000097759 Prdm16-007 154316125-154636866 protein_coding
  ENSMUST00000105636 Prdm16-004 154316125-154636866 protein_coding
  ENSMUST00000105637 Prdm16-002 154316125-154636866 protein_coding
  ENSMUST00000105638 Prdm16-006 154316125-154636866 protein_coding
  ENSMUST00000124771 Prdm16-008 154355277-154636873 protein_coding
  ENSMUST00000131762 Prdm16-011 154346139-154348457 processed_transcript
  ENSMUST00000135064 Prdm16-010 154476469-154528765 processed_transcript
  ENSMUST00000141164 Prdm16-005 154316125-154636866 processed_transcript
  ENSMUST00000145217 Prdm16-013 154323331-154334852 processed_transcript
  ENSMUST00000149605 Prdm16-009 154476500-154636797 processed_transcript
  ENSMUST00000156069 Prdm16-012 154328260-154334922 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000030902ENSMUST00000070313ENSMUST00000105636ENSMUST00000105637ENSMUST00000105638ENSMUST00000124771ENSMUST00000131762ENSMUST00000135064ENSMUST00000145217ENSMUST00000149605
Transcript ID C166 Tie2+ EC mES
ENSMUST00000030902 N/A N/A 0.031±0.00
ENSMUST00000070313 0.014±0.01 N/A 0.006±0.00
ENSMUST00000105636 0.018±0.01 0.244±0.00 0.006±0.00
ENSMUST00000105637 0.011±0.00 0.208±0.01 N/A
ENSMUST00000105638 N/A 0.344±0.14 N/A
ENSMUST00000124771 0.034±0.00 N/A N/A
ENSMUST00000131762 0.139±0.00 N/A N/A
ENSMUST00000135064 N/A N/A 0.797±0.00
ENSMUST00000145217 N/A 1.471±0.00 0.054±0.00
ENSMUST00000149605 0.141±0.00 N/A 0.187±0.00

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00099V CIL_00099V_0002 VISTA
CIL_0007TB CIL_0007TB_0002 VISTA

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0003676 IEA nucleic acid binding
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0017053 IDA transcriptional repressor complex
GO:0022008 IDA neurogenesis
GO:0030512 ISS negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030853 ISS negative regulation of granulocyte differentiation
GO:0035019 IDA somatic stem cell maintenance
GO:0043457 IDA regulation of cellular respiration
GO:0043565 IDA sequence-specific DNA binding
GO:0043586 IMP tongue development
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046332 IPI SMAD binding
GO:0046872 IEA metal ion binding
GO:0050872 IDA white fat cell differentiation
GO:0050873 IMP brown fat cell differentiation
GO:0060021 IMP palate development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078324 PRDM16 protein_coding Danio_rerio
ENSG00000142611 PRDM16 PR domain containing 16 protein_coding Homo_sapiens

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