ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: tropomyosin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143549 TPM3 9606 - 1:154155304-154194648 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000271850 TPM3-015 154157318-154192058 protein_coding
  ENST00000302206 TPM3-011 154157583-154178183 protein_coding
  ENST00000312970 TPM3-022 154157526-154183078 processed_transcript
  ENST00000323144 TPM3-010 154158670-154183164 protein_coding
  ENST00000328159 TPM3-006 154156694-154183119 protein_coding
  ENST00000330188 TPM3-009 154156364-154183205 protein_coding
  ENST00000341372 TPM3-005 154156366-154183181 protein_coding
  ENST00000341485 TPM3-003 154156364-154183208 protein_coding
  ENST00000368527 TPM3-019 154172067-154183816 processed_transcript
  ENST00000368530 TPM3-001 154167465-154192211 protein_coding
  ENST00000368531 TPM3-026 154158609-154183130 protein_coding
  ENST00000368533 TPM3-004 154155308-154183172 protein_coding
  ENST00000368545 TPM3-014 154156357-154172677 retained_intron
  ENST00000466010 TPM3-013 154187260-154191948 processed_transcript
  ENST00000469717 TPM3-008 154156359-154183147 processed_transcript
  ENST00000473036 TPM3-021 154172672-154183174 retained_intron
  ENST00000504663 TPM3-025 154169652-154170700 retained_intron
  ENST00000505010 TPM3-023 154171882-154176242 retained_intron
  ENST00000509409 TPM3-016 154157112-154183227 nonsense_mediated_decay
  ENST00000509601 TPM3-020 154170408-154183208 nonsense_mediated_decay
  ENST00000513769 TPM3-024 154157532-154171006 retained_intron
  ENST00000515609 TPM3-018 154191203-154194648 protein_coding
  ENST00000611659 TPM3-201 154155304-154183249 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000312970ENST00000330188ENST00000341372ENST00000341485ENST00000368533ENST00000368545ENST00000469717ENST00000473036ENST00000509409ENST00000509601
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000312970 N/A 216.370±0.00 N/A N/A 222.921±0.00
ENST00000330188 N/A 57.821±13.23 N/A N/A 53.410±30.41
ENST00000341372 132.076±8.42 159.835±40.33 86.175±0.00 144.679±0.00 82.968±39.71
ENST00000341485 75.341±43.10 133.095±47.28 39.381±0.00 155.799±0.00 72.082±44.81
ENST00000368533 20.928±0.00 N/A N/A N/A 22.093±1.53
ENST00000368545 N/A N/A N/A N/A 8.255±5.08
ENST00000469717 N/A N/A N/A N/A 7.441±4.79
ENST00000473036 N/A N/A N/A N/A 135.484±28.71
ENST00000509409 N/A N/A N/A N/A 37.630±51.53
ENST00000509601 N/A N/A N/A N/A 2.093±0.00

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0002102 IEA podosome
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 TAS cytoskeleton
GO:0005862 TAS muscle thin filament tropomyosin
GO:0006928 TAS cellular component movement
GO:0006936 TAS muscle contraction
GO:0007165 IEA signal transduction
GO:0030049 TAS muscle filament sliding
GO:0030426 IEA growth cone
GO:0030863 IEA cortical cytoskeleton
GO:0031941 IEA filamentous actin
GO:0032154 IEA cleavage furrow
GO:0043005 IEA neuron projection
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005162 tpm3 protein_coding Danio_rerio
ENSMUSG00000027940 Tpm3 protein_coding Mus_musculus

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