ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: SRY (sex determining region Y)-box 13
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000143842 SOX13 9606 + 1:204073115-204127743 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000272193 SOX13-004 204116065-204126152 processed_transcript
  ENST00000367203 SOX13-001 204073115-204119859 processed_transcript
  ENST00000367204 SOX13-002 204073604-204127743 protein_coding
  ENST00000480326 SOX13-003 204116507-204122917 nonsense_mediated_decay
  ENST00000525258 SOX13-009 204122386-204123729 retained_intron
  ENST00000525442 SOX13-007 204074026-204113088 protein_coding
  ENST00000528591 SOX13-008 204078129-204116627 protein_coding
  ENST00000530882 SOX13-006 204073156-204117158 processed_transcript
  ENST00000534185 SOX13-005 204073153-204114570 processed_transcript
  ENST00000618875 SOX13-201 204112916-204127741 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHMVEC-DHUVECENST00000272193ENST00000367203ENST00000367204ENST00000618875
Transcript ID BECs HAoEC HMVEC-D HUVEC
ENST00000272193 N/A N/A N/A 0.245±0.00
ENST00000367203 N/A 1.323±0.13 N/A 0.235±0.00
ENST00000367204 2.483±0.00 2.559±0.61 5.755±0.00 5.108±4.35
ENST00000618875 5.199±0.00 6.794±3.30 N/A 6.180±5.77

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0008W2 CIL_0008W2_0001 VISTA
CIL_0000TU CIL_0000TU_0002 CGP
CIL_00057L CIL_00057L_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009653 TAS anatomical structure morphogenesis
GO:0043565 ISS sequence-specific DNA binding
GO:0045586 IEA regulation of gamma-delta T cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030297 sox13 protein_coding Danio_rerio
ENSMUSG00000070643 Sox13 protein_coding Mus_musculus

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