ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: SNF8, ESCRT-II complex subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000159210 SNF8 9606 - 17:48929316-48945117 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000290330 SNF8-002 48930374-48944810 protein_coding
  ENST00000502492 SNF8-001 48929316-48945117 protein_coding
  ENST00000504000 SNF8-003 48930390-48933318 retained_intron
  ENST00000506104 SNF8-014 48936041-48937107 retained_intron
  ENST00000507302 SNF8-007 48931643-48944747 nonsense_mediated_decay
  ENST00000509989 SNF8-011 48930426-48937054 nonsense_mediated_decay
  ENST00000509995 SNF8-008 48930371-48944733 nonsense_mediated_decay
  ENST00000510195 SNF8-005 48936996-48944806 retained_intron
  ENST00000510558 SNF8-006 48930371-48944806 nonsense_mediated_decay
  ENST00000511214 SNF8-013 48936034-48937239 retained_intron
  ENST00000512243 SNF8-009 48935703-48944708 retained_intron
  ENST00000514089 SNF8-015 48930381-48937118 processed_transcript
  ENST00000514929 SNF8-004 48931643-48944831 nonsense_mediated_decay
  ENST00000515174 SNF8-010 48936656-48944139 retained_intron
  ENST00000515572 SNF8-012 48930388-48933591 retained_intron
  ENST00000573795 SNF8-017 48930429-48944811 nonsense_mediated_decay
  ENST00000576353 SNF8-016 48930504-48944825 nonsense_mediated_decay

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000290330ENST00000502492ENST00000504000ENST00000509995ENST00000510195ENST00000514089ENST00000514929ENST00000515572ENST00000576353
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000290330 67.033±7.85 33.779±14.32 N/A 22.948±0.00 34.699±21.41
ENST00000502492 N/A 3.622±0.73 N/A N/A 5.075±3.77
ENST00000504000 N/A 1.426±0.00 9.209±0.00 N/A 1.901±1.21
ENST00000509995 58.334±0.00 40.446±8.94 N/A N/A 44.628±0.00
ENST00000510195 N/A 53.050±3.11 N/A N/A 34.812±13.19
ENST00000514089 131.977±39.08 32.710±0.00 66.213±0.00 N/A 18.070±2.34
ENST00000514929 N/A N/A N/A N/A 30.245±0.00
ENST00000515572 N/A N/A N/A N/A 7.991±0.00
ENST00000576353 40.697±1.70 28.860±6.19 N/A 23.341±0.00 26.050±16.53

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0005768 IEA endosome
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0008134 IDA transcription factor binding
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016197 TAS endosomal transport
GO:0042803 IPI protein homodimerization activity
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058076 snf8 protein_coding Danio_rerio
ENSMUSG00000006058 Snf8 protein_coding Mus_musculus

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