ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: nuclear RNA export factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162231 NXF1 9606 - 11:62792123-62806302 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000294172 NXF1-201 62792126-62805492 protein_coding
  ENST00000525576 NXF1-010 62802004-62805440 nonsense_mediated_decay
  ENST00000526163 NXF1-011 62798845-62805440 processed_transcript
  ENST00000527064 NXF1-008 62803550-62805471 retained_intron
  ENST00000527497 NXF1-017 62792418-62794628 retained_intron
  ENST00000527902 NXF1-013 62792231-62796082 protein_coding
  ENST00000530875 NXF1-003 62794338-62805469 protein_coding
  ENST00000531131 NXF1-004 62800113-62805440 protein_coding
  ENST00000531474 NXF1-002 62803419-62804185 protein_coding
  ENST00000531579 NXF1-009 62796305-62805469 processed_transcript
  ENST00000531709 NXF1-006 62792123-62805470 protein_coding
  ENST00000531872 NXF1-016 62796149-62798606 retained_intron
  ENST00000532297 NXF1-001 62792171-62806302 protein_coding
  ENST00000533048 NXF1-014 62792353-62797058 processed_transcript
  ENST00000533440 NXF1-015 62794751-62796563 retained_intron
  ENST00000533499 NXF1-007 62792415-62795400 retained_intron
  ENST00000533671 NXF1-012 62801974-62805193 protein_coding

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000294172ENST00000527902ENST00000531709ENST00000533048
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000294172 10.515±0.96 22.369±8.99 N/A 11.408±0.00 13.883±5.94
ENST00000527902 117.643±21.23 N/A 177.477±0.00 N/A 27.917±0.00
ENST00000531709 3.426±0.54 12.450±9.67 25.606±0.00 10.165±0.00 9.348±7.15
ENST00000533048 17.952±0.00 N/A 82.757±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00089X CIL_00089X_0001 VISTA

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000346 IDA transcription export complex
GO:0003723 IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0005487 IEA nucleocytoplasmic transporter activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005643 IEA nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006405 IEA RNA export from nucleus
GO:0006406 IDA:IEA mRNA export from nucleus
GO:0006810 IEA transport
GO:0010467 TAS gene expression
GO:0016032 IEA viral process
GO:0016607 IDA nuclear speck
GO:0016973 IEA poly(A)+ mRNA export from nucleus
GO:0042405 IEA nuclear inclusion body
GO:0044822 IDA poly(A) RNA binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055076 nxf1 protein_coding Danio_rerio
ENSDARG00000086017 zgc:153681 protein_coding Danio_rerio
ENSMUSG00000010097 Nxf1 protein_coding Mus_musculus

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