ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000010097 Nxf1 10090 + 19:8757073-8772475 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000010241 Nxf1-001 8757073-8770922 protein_coding
  ENSMUST00000010248 Nxf1-201 8770996-8772475 protein_coding
  ENSMUST00000183780 Nxf1-009 8757119-8767613 processed_transcript
  ENSMUST00000183898 Nxf1-008 8770092-8770921 processed_transcript
  ENSMUST00000183939 Nxf1-003 8757150-8765291 protein_coding
  ENSMUST00000184387 Nxf1-005 8767011-8767887 retained_intron
  ENSMUST00000184663 Nxf1-004 8764934-8767396 protein_coding
  ENSMUST00000184756 Nxf1-011 8757150-8763739 nonsense_mediated_decay
  ENSMUST00000184808 Nxf1-007 8770136-8770862 retained_intron
  ENSMUST00000184826 Nxf1-010 8768635-8770849 protein_coding
  ENSMUST00000184970 Nxf1-002 8757107-8772456 protein_coding
  ENSMUST00000185056 Nxf1-006 8766677-8769167 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000010241ENSMUST00000010248ENSMUST00000183898ENSMUST00000184970
Transcript ID C166 Tie2+ EC mES
ENSMUST00000010241 40.296±5.73 27.801±4.70 16.157±4.20
ENSMUST00000010248 103.015±20.36 84.740±24.15 44.083±8.05
ENSMUST00000183898 N/A N/A 95.411±17.67
ENSMUST00000184970 N/A 5.619±0.74 6.082±0.18

Conserved Regions

Region IDSub-RegionRegion Type
CIL_00089X CIL_00089X_0002 VISTA

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000346 ISS transcription export complex
GO:0003674 ND molecular_function
GO:0003723 IDA RNA binding
GO:0003729 IDA mRNA binding
GO:0005487 IDA nucleocytoplasmic transporter activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005643 IDA nuclear pore
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006405 IDA RNA export from nucleus
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0016607 ISS nuclear speck
GO:0016973 IPI poly(A)+ mRNA export from nucleus
GO:0042405 IDA nuclear inclusion body
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055076 nxf1 protein_coding Danio_rerio
ENSDARG00000086017 zgc:153681 protein_coding Danio_rerio
ENSG00000162231 NXF1 nuclear RNA export factor 1 protein_coding Homo_sapiens

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