ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: retinoblastoma binding protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162521 RBBP4 9606 + 1:32651142-32686211 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373485 RBBP4-002 32651234-32680657 protein_coding
  ENST00000373493 RBBP4-001 32651148-32686211 protein_coding
  ENST00000401893 RBBP4-017 32651210-32668579 retained_intron
  ENST00000414241 RBBP4-011 32651142-32680053 protein_coding
  ENST00000445722 RBBP4-013 32651487-32668281 protein_coding
  ENST00000458695 RBBP4-003 32651356-32680040 protein_coding
  ENST00000460669 RBBP4-009 32669107-32680653 nonsense_mediated_decay
  ENST00000463378 RBBP4-008 32669093-32679908 protein_coding
  ENST00000465780 RBBP4-005 32651226-32652506 retained_intron
  ENST00000475321 RBBP4-007 32668319-32672901 protein_coding
  ENST00000477563 RBBP4-006 32651278-32668337 nonsense_mediated_decay
  ENST00000482190 RBBP4-010 32669256-32680651 protein_coding
  ENST00000490500 RBBP4-004 32651485-32657572 protein_coding
  ENST00000492348 RBBP4-019 32651217-32680204 nonsense_mediated_decay
  ENST00000524393 RBBP4-015 32651214-32669102 processed_transcript
  ENST00000525506 RBBP4-020 32651218-32657674 retained_intron
  ENST00000526193 RBBP4-016 32651217-32669267 nonsense_mediated_decay
  ENST00000527118 RBBP4-014 32651178-32669088 nonsense_mediated_decay
  ENST00000531983 RBBP4-018 32668569-32669256 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsHAoECHHSECHMVEC-DHUVECENST00000373485ENST00000373493ENST00000414241ENST00000458695ENST00000492348ENST00000525506ENST00000527118
Transcript ID BECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000373485 N/A N/A N/A N/A 9.963±1.50
ENST00000373493 2.396±0.78 3.467±0.78 1.924±0.00 3.991±0.00 5.831±4.30
ENST00000414241 N/A N/A N/A N/A 15.458±8.57
ENST00000458695 N/A 22.039±1.99 N/A 14.035±0.00 17.366±5.43
ENST00000492348 6.963±3.64 33.359±12.96 7.918±0.00 31.542±0.00 17.382±10.29
ENST00000525506 N/A N/A N/A N/A 58.982±0.00
ENST00000527118 N/A N/A N/A N/A 1.741±0.00

Conserved Regions

Not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0006200 IDA ATP catabolic process
GO:0006260 IEA DNA replication
GO:0006334 TAS nucleosome assembly
GO:0006335 IDA DNA replication-dependent nucleosome assembly
GO:0006336 IDA DNA replication-independent nucleosome assembly
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008094 IDA DNA-dependent ATPase activity
GO:0008285 TAS negative regulation of cell proliferation
GO:0016580 NAS Sin3 complex
GO:0016581 NAS NuRD complex
GO:0016589 IDA NURF complex
GO:0031492 IDA nucleosomal DNA binding
GO:0031497 IDA chromatin assembly
GO:0033186 IDA CAF-1 complex
GO:0034080 TAS CENP-A containing nucleosome assembly
GO:0035098 IDA ESC/E(Z) complex
GO:0042393 NAS histone binding
GO:0042826 IPI histone deacetylase binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0051726 TAS regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029058 rbbp4 protein_coding Danio_rerio
ENSMUSG00000057236 Rbbp4 protein_coding Mus_musculus

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