ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description:
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000057236 Rbbp4 10090 - 4:129307100-129335370 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102598 Rbbp4-001 129307100-129335370 protein_coding
  ENSMUST00000135585 Rbbp4-002 129328649-129335083 protein_coding
  ENSMUST00000140291 Rbbp4-004 129309517-129334644 processed_transcript
  ENSMUST00000147183 Rbbp4-003 129324824-129335249 retained_intron

Expression Patterns


Heat Map
Numeric Values
Transcript'; C166Tie2+ ECmESENSMUST00000102598ENSMUST00000140291ENSMUST00000147183
Transcript ID C166 Tie2+ EC mES
ENSMUST00000102598 80.002±4.90 31.181±22.54 7.559±2.06
ENSMUST00000140291 N/A 35.885±19.94 N/A
ENSMUST00000147183 N/A 3.039±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0002A9 CIL_0002A9_0002 CGP
CIL_0002A8 CIL_0002A8_0002 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:ISS nucleus
GO:0005654 IEA nucleoplasm
GO:0006200 IEA ATP catabolic process
GO:0006260 IEA DNA replication
GO:0006335 IEA DNA replication-dependent nucleosome assembly
GO:0006336 IEA DNA replication-independent nucleosome assembly
GO:0006338 TAS:ISS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0008094 ISS DNA-dependent ATPase activity
GO:0016581 IDA NuRD complex
GO:0016589 IEA NURF complex
GO:0031492 IEA nucleosomal DNA binding
GO:0031497 ISS chromatin assembly
GO:0033186 ISS CAF-1 complex
GO:0035098 IDA ESC/E(Z) complex
GO:0042826 IEA histone deacetylase binding
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029058 rbbp4 protein_coding Danio_rerio
ENSG00000162521 RBBP4 retinoblastoma binding protein 4 protein_coding Homo_sapiens

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