ANGIOGENES: A knowledge database for angiogenesis

Institute of Cardiovascular Regeneration, Goethe University Frankfurt

Gene Info

Description: collagen, type VI, alpha 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000163359 COL6A3 9606 - 2:237324003-237414375 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295550 COL6A3-001 237324012-237414375 protein_coding
  ENST00000347401 COL6A3-201 237324085-237414148 protein_coding
  ENST00000353578 COL6A3-202 237324012-237414207 protein_coding
  ENST00000392003 COL6A3-003 237371617-237414207 protein_coding
  ENST00000392004 COL6A3-002 237371617-237414177 protein_coding
  ENST00000409809 COL6A3-011 237324774-237396817 protein_coding
  ENST00000433762 COL6A3-008 237377118-237414177 protein_coding
  ENST00000468792 COL6A3-010 237338940-237340602 retained_intron
  ENST00000472056 COL6A3-012 237324085-237414148 protein_coding
  ENST00000473258 COL6A3-005 237324003-237330180 processed_transcript
  ENST00000491233 COL6A3-004 237386454-237388077 protein_coding
  ENST00000491769 COL6A3-009 237324019-237355779 retained_intron
  ENST00000493475 COL6A3-007 237356790-237357883 retained_intron
  ENST00000493608 COL6A3-006 237332968-237334786 processed_transcript

Expression Patterns


Heat Map
Numeric Values
Transcript'; BECsCECsHAoECHHSECHMVEC-DHUVECENST00000295550ENST00000347401ENST00000353578ENST00000392003ENST00000392004ENST00000409809ENST00000433762ENST00000472056ENST00000473258ENST00000491769
Transcript ID BECs CECs HAoEC HHSEC HMVEC-D HUVEC
ENST00000295550 N/A N/A 0.066±0.02 N/A 0.267±0.00 0.020±0.00
ENST00000347401 N/A N/A 0.056±0.01 0.366±0.00 N/A 0.004±0.00
ENST00000353578 N/A N/A 0.080±0.05 N/A 0.787±0.00 2.834±2.79
ENST00000392003 N/A N/A 0.048±0.01 N/A N/A 0.022±0.01
ENST00000392004 N/A N/A 0.121±0.02 N/A N/A 0.023±0.00
ENST00000409809 N/A N/A 0.076±0.05 N/A N/A 0.055±0.03
ENST00000433762 N/A N/A N/A N/A N/A 0.012±0.00
ENST00000472056 2.705±0.47 N/A 0.051±0.01 0.352±0.00 0.622±0.00 2.694±4.66
ENST00000473258 N/A N/A N/A N/A N/A 0.017±0.01
ENST00000491769 N/A 146.162±30.68 0.055±0.00 0.125±0.00 N/A 0.047±0.10

Conserved Regions

Region IDSub-RegionRegion Type
CIL_0008L9 CIL_0008L9_0001 VISTA
CIL_0000XQ CIL_0000XQ_0001 CGP
CIL_0007RW CIL_0007RW_0001 VISTA
CIL_000439 CIL_000439_0001 CGP

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004867 IEA serine-type endopeptidase inhibitor activity
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0005589 TAS collagen type VI trimer
GO:0005615 IDA extracellular space
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007155 IEA cell adhesion
GO:0007411 TAS axon guidance
GO:0007517 TAS muscle organ development
GO:0010951 IEA negative regulation of endopeptidase activity
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IDA extracellular matrix
GO:0031982 IDA vesicle
GO:0042383 IEA sarcolemma
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077139 col6a3 protein_coding Danio_rerio
ENSMUSG00000048126 Col6a3 protein_coding Mus_musculus

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